RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TMEM53Q6P2H8 277 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 SLC16A14Q7RTX9 510 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 HDDC2Q7Z4H3 204 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 LRP11Q86VZ4 500 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 MEX3DQ86XN8 651 aaKnown RBP12.98□□□□□ -0.33
LIG1-215ENST00000597901 NRMQ8IXM6 262 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 RNF113BQ8IZP6 322 aaKnown RBP12.98□□□□□ -0.33
LIG1-215ENST00000597901 OFCC1Q8IZS5 231 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 LRRC18Q8N456 261 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 LRRC75AQ8NAA5 344 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 ZNF540Q8NDQ6 660 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 NOXO1Q8NFA2 376 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 GEMIN6Q8WXD5 167 aaKnown RBP12.98□□□□□ -0.33
LIG1-215ENST00000597901 NMD3Q96D46 503 aaKnown RBP12.98□□□□□ -0.33
LIG1-215ENST00000597901 PIMREGQ9BSJ6 248 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 SIAEQ9HAT2 523 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 DYNLRB1Q9NP97 96 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 STX18Q9P2W9 335 aaKnown RBP12.98□□□□□ -0.33
LIG1-215ENST00000597901 REV1Q9UBZ9 1251 aa12.98□□□□□ -0.33
LIG1-215ENST00000597901 TLN2Q9Y4G6 2542 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 A0A087WUU8 490 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 SYNGR3O43761 229 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 SLC2A10O95528 541 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 ERCC1P07992 297 aaPredicted RBP12.97□□□□□ -0.33
LIG1-215ENST00000597901 IGHV4-31P0DP07 118 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 CCL2P13500 99 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 NCK1P16333 377 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 LSP1P33241 339 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 CTXN1P60606 82 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 RPL27P61353 136 aaKnown RBP12.97□□□□□ -0.33
LIG1-215ENST00000597901 FHL1Q13642 323 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 TAF11Q15544 211 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 C6orf52Q5T4I8 152 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 SLC25A47Q6Q0C1 308 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 TBPL2Q6SJ96 375 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 TSEN54Q7Z6J9 526 aaKnown RBP12.97□□□□□ -0.33
LIG1-215ENST00000597901 SLC30A7Q8NEW0 376 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 OR51A7Q8NH64 312 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 UBASH3BQ8TF42 649 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 ACOT11Q8WXI4 607 aaPredicted RBP12.97□□□□□ -0.33
LIG1-215ENST00000597901 FAM162AQ96A26 154 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 HSH2DQ96JZ2 352 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 RBP7Q96R05 134 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 KCNK17Q96T54 332 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 KCTD14Q9BQ13 255 aaPredicted RBP12.97□□□□□ -0.33
LIG1-215ENST00000597901 MS4A5Q9H3V2 200 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 DUSP13Q9UII6 198 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 UGT2A1Q9Y4X1 527 aa12.97□□□□□ -0.33
LIG1-215ENST00000597901 ANK3Q12955 4377 aaKnown RBP12.97□□□□□ -0.33
LIG1-215ENST00000597901 IGKV1D-43A0A0B4J1Z2 117 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 IGHV4-61A0A0C4DH41 118 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 EFCAB9A8MZ26 197 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 SNX3O60493 162 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 PRSS23O95084 383 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 PTHP01270 115 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 MMP7P09237 267 aaPredicted RBP12.96□□□□□ -0.33
LIG1-215ENST00000597901 SAGP10523 405 aaPredicted RBP12.96□□□□□ -0.33
LIG1-215ENST00000597901 DRD4P21917 467 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 GIFP27352 417 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 PRDX6P30041 224 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 CDAP32320 146 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 GZMKP49863 264 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 RPS23P62266 143 aaKnown RBP12.96□□□□□ -0.33
LIG1-215ENST00000597901 MRPS34P82930 218 aaKnown RBP12.96□□□□□ -0.33
LIG1-215ENST00000597901 PLP2Q04941 152 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 SGCAQ16586 387 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 ANKDD1AQ495B1 522 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 IQCCQ4KMZ1 466 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 THEM4Q5T1C6 240 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 GLYATQ6IB77 296 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 ZNF730Q6ZMV8 503 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 MBOAT2Q6ZWT7 520 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 CPLX4Q7Z7G2 160 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 OAFQ86UD1 273 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 ZNF786Q8N393 782 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 PAQR4Q8N4S7 273 aaPredicted RBP12.96□□□□□ -0.33
LIG1-215ENST00000597901 NSMAFQ92636 917 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 MDFIQ99750 246 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 SYT3Q9BQG1 590 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 FAM107BQ9H098 131 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 KCNN2Q9H2S1 579 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 C1orf198Q9H425 327 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 NMNAT1Q9HAN9 279 aaPredicted RBP12.96□□□□□ -0.33
LIG1-215ENST00000597901 SMURF2Q9HAU4 748 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 ABCD2Q9UBJ2 740 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 SLC7A8Q9UHI5 535 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 FZR1Q9UM11 496 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 ENPP4Q9Y6X5 453 aa12.96□□□□□ -0.33
LIG1-215ENST00000597901 TRAV27A0A087WT01 109 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 IQCMA0A1B0GVH7 501 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 SLC22A23A1A5C7 686 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 GMNCA6NCL1 334 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 FAM157BP0CG42 384 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 TCN1P20061 433 aaPredicted RBP12.95□□□□□ -0.34
LIG1-215ENST00000597901 FMODQ06828 376 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 CD47Q08722 323 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 TOP3AQ13472 1001 aaPredicted RBP12.95□□□□□ -0.34
LIG1-215ENST00000597901 FAM27BQ5VT28 67 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 PODNL1Q6PEZ8 512 aa12.95□□□□□ -0.34
LIG1-215ENST00000597901 TMPRSS11FQ6ZWK6 438 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms