RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CD226Q15762 336 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 KIF26BQ2KJY2 2108 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 C1QL3Q5VWW1 255 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 MED25Q71SY5 747 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 BAHD1Q8TBE0 780 aaPredicted RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 SMIM10Q96HG1 83 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 AMELYQ99218 206 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 MFFQ9GZY8 342 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 LYRM4Q9HD34 91 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 MED11Q9P086 117 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 SERTAD3Q9UJW9 196 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 FBXO4Q9UKT5 387 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 FBXL21Q9UKT6 434 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 F5H5P2 479 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 TGFBR3LH3BV60 316 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 K7EQS6 105 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 HCRTR2O43614 444 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 SLC35E2P0CK97 266 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 ACHEP22303 614 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 G0S2P27469 103 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 RAP2BP61225 183 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 TDGQ13569 410 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 SMAD2Q15796 467 aaKnown RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 MEP1BQ16820 701 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 SPAG16Q8N0X2 631 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 STPG2Q8N412 459 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 BCORP1Q8N888 145 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 OR13H1Q8NG92 308 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 KTI12Q96EK9 354 aaPredicted RBP13.87□□□□□ -0.19
UPF1-204ENST00000596842 TAS2R5Q9NYW4 299 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 FREM3P0C091 2139 aa13.87□□□□□ -0.19
UPF1-204ENST00000596842 UNC13CQ8NB66 2214 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 A0A087WUJ7 227 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 EIF1AYO14602 144 aaKnown RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 GSTZ1O43708 216 aaPredicted RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 MAP3K8P41279 467 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 C12orf45Q8N5I9 185 aaPredicted RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 MOKQ9UQ07 419 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 ZNF705EA8MWA4 302 aaPredicted RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 EGFP01133 1207 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 TAF13Q15543 124 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 FIP1L1Q6UN15 594 aaKnown RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 MDGA2Q7Z553 956 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 CD163Q86VB7 1156 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 TMEM185BQ9H7F4 350 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 TREM1Q9NP99 234 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 BIN3Q9NQY0 253 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 ZNF230Q9UIE0 474 aaPredicted RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 XKRYO14609 159 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 LINC01565O15544 149 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 DLX5P56178 289 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 HHEXQ03014 270 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 TMEM205Q6UW68 189 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 GSG1LQ6UXU4 331 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 ZNF321PQ8N8H1 164 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 FLVCR1-AS1Q8TAF5 88 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 MIB2Q96AX9 1013 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 CMKLR1Q99788 373 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 CMSS1Q9BQ75 279 aaKnown RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 OR10A5Q9H207 317 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 ELOVL3Q9HB03 270 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 MRTO4Q9UKD2 239 aaKnown RBP13.86□□□□□ -0.19
UPF1-204ENST00000596842 PLEKHA6Q9Y2H5 1048 aa13.86□□□□□ -0.19
UPF1-204ENST00000596842 CFAP54Q96N23 3096 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 NAP1L6A6NFF2 107 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 SULT1B1O43704 296 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 NDUFB6O95139 128 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 EIF1AXP47813 144 aaKnown RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 GMFBP60983 142 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 RPL18Q07020 188 aaKnown RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 GFOD2Q3B7J2 385 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 STK35Q8TDR2 534 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 FBXO17Q96EF6 278 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 A0A0J9YY10 115 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 FITM1A5D6W6 292 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 CLDN4O14493 209 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 CD14P08571 375 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 GIPP09681 153 aaPredicted RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 RAB40ALP0C0E4 278 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 MEOX2P50222 304 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 RAG2P55895 527 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 ZNF273Q14593 569 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 RBMS2Q15434 407 aaKnown RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 OR2G2Q8NGZ5 317 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 CASTOR1Q8WTX7 329 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 RAB40AQ8WXH6 277 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 FAM46BQ96A09 425 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 LPAR4Q99677 370 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 NPDC1Q9NQX5 325 aaPredicted RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 MRPS33Q9Y291 106 aaKnown RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 PLSCR5A0PG75 271 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 SCDO00767 359 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 KCNAB3O43448 404 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 AMY2AP04746 511 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 HOXD4P09016 255 aaPredicted RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 ZNF28P17035 718 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 PRSS3P35030 304 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 RBM34P42696 430 aaKnown RBP13.85□□□□□ -0.19
UPF1-204ENST00000596842 RAB38P57729 211 aa13.85□□□□□ -0.19
UPF1-204ENST00000596842 PRPS1P60891 318 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms