RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MDP1Q86V88 176 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 SKA3Q8IX90 412 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 SMAP2Q8WU79 429 aaPredicted RBP13.09□□□□□ -0.31
UPF1-202ENST00000594243 Q96M85 177 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 KCNN2Q9H2S1 579 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 OR52D1Q9H346 318 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 IL20RAQ9UHF4 553 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 FBXL3Q9UKT7 428 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 ADAM18Q9Y3Q7 739 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 IER3IP1Q9Y5U9 82 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 U3KQV3 271 aa13.09□□□□□ -0.31
UPF1-202ENST00000594243 POLQO75417 2590 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 EBAG9O00559 213 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 IMPA2O14732 288 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 SLC2A10O95528 541 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 RAB36O95755 333 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 GASTP01350 101 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 HLA-HP01893 362 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 APEHP13798 732 aaKnown RBP13.08□□□□□ -0.32
UPF1-202ENST00000594243 FXYD6P3P58550 94 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 MRPS34P82930 218 aaKnown RBP13.08□□□□□ -0.32
UPF1-202ENST00000594243 PIGFQ07326 219 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 SPOCK1Q08629 439 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 PPP1R8Q12972 351 aaKnown RBP13.08□□□□□ -0.32
UPF1-202ENST00000594243 SLC36A2Q495M3 483 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 RPL13AP3Q6NVV1 102 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 SLC25A47Q6Q0C1 308 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 THSD4Q6ZMP0 1018 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 PAPD5Q8NDF8 572 aaKnown RBP13.08□□□□□ -0.32
UPF1-202ENST00000594243 OR9Q2Q8NGE9 314 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 FANK1Q8TC84 345 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 TMEM171Q8WVE6 324 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 NSMAFQ92636 917 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 NEUROG1Q92886 237 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 NMD3Q96D46 503 aaKnown RBP13.08□□□□□ -0.32
UPF1-202ENST00000594243 SIAEQ9HAT2 523 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 MOKQ9UQ07 419 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 ATP23Q9Y6H3 246 aa13.08□□□□□ -0.32
UPF1-202ENST00000594243 ANKHD1Q8IWZ3 2542 aaKnown RBP13.07□□□□□ -0.32
UPF1-202ENST00000594243 AKAP9Q99996 3911 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 TEX13CA0A0J9YWL9 993 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 PRSS37A4D1T9 235 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 ZNF503-AS2A6NEH8 195 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 E7EQL1 145 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 SMPD2O60906 423 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 TXNDC12O95881 172 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 CECR9P0C854 216 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 DANCRP0C864 163 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 GSTM3P21266 225 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 PTDSS1P48651 473 aaKnown RBP13.07□□□□□ -0.32
UPF1-202ENST00000594243 IDH3GP51553 393 aaPredicted RBP13.07□□□□□ -0.32
UPF1-202ENST00000594243 CBX1P83916 185 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 NAAAQ02083 359 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 FMODQ06828 376 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 NPRL3Q12980 569 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 MESTQ5EB52 335 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 ZNF770Q6IQ21 691 aaPredicted RBP13.07□□□□□ -0.32
UPF1-202ENST00000594243 TMEM53Q6P2H8 277 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 SLC16A14Q7RTX9 510 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 ADCK1Q86TW2 530 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 CLDN22Q8N7P3 220 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 AQP11Q8NBQ7 271 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 ERMAPQ96PL5 475 aaPredicted RBP13.07□□□□□ -0.32
UPF1-202ENST00000594243 SH3GL3Q99963 347 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 DHRS9Q9BPW9 319 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 IFT27Q9BW83 186 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 CXXC4Q9H2H0 198 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 CXorf56Q9H5V9 222 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 RNF121Q9H920 327 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 ZNF224Q9NZL3 707 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 LAMP3Q9UQV4 416 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 CSMD2Q7Z408 3487 aa13.07□□□□□ -0.32
UPF1-202ENST00000594243 IGKV1D-43A0A0B4J1Z2 117 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 SLC22A23A1A5C7 686 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 ARPC3O15145 178 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 IDH3BO43837 385 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 FKBP6O75344 327 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 PTHP01270 115 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 NOS3P29474 1203 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 GIPRP48546 466 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 ARHGDIAP52565 204 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 COX10Q12887 443 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 KRR1Q13601 381 aaKnown RBP13.06□□□□□ -0.32
UPF1-202ENST00000594243 SGCAQ16586 387 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 FAM27BQ5VT28 67 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 C1orf146Q5VVC0 180 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 AGAP6Q5VW22 663 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 ZNF544Q6NX49 715 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 ZNF620Q6ZNG0 422 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 RASSF6Q6ZTQ3 369 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 ASRGL1Q7L266 308 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 LRRC75A-AS1Q8N1F1 130 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 LRRC18Q8N456 261 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 OR4F15Q8NGB8 312 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 OR52L1Q8NGH7 329 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 GIPC3Q8TF64 312 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 RASD2Q96D21 266 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 SAMD8Q96LT4 415 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 DGCR6LQ9BY27 220 aa13.06□□□□□ -0.32
UPF1-202ENST00000594243 SEC61A2Q9H9S3 476 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms