RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SSR3Q9UNL2 185 aa9.38□□□□□ -0.91
SS18-217ENST00000580958 COA3Q9Y2R0 106 aaPredicted RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 SIRT4Q9Y6E7 314 aaPredicted RBP9.38□□□□□ -0.91
SS18-217ENST00000580958 IGKV1D-43A0A0B4J1Z2 117 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SLC35F4A4IF30 521 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 LINC01387J3KSC0 135 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SMAD9O15198 467 aaKnown RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 DNPH1O43598 174 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 AHCYL1O43865 530 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 CXCL13O43927 109 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 IGHG1P01857 330 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 CELP19835 753 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SDHBP21912 280 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 ENPP1P22413 925 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 PSMA1P25786 263 aaKnown RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 PTGS2P35354 604 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 RPS27P42677 84 aaKnown RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 EIF1AXP47813 144 aaKnown RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 BLVRAP53004 296 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SH3BGRP55822 239 aaPredicted RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 CLDN15P56746 228 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 CARD18P57730 90 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 CLRN1P58418 232 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 RAC3P60763 192 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 ACTA2P62736 377 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 PPIAP62937 165 aaKnown RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 ACTG2P63267 376 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 BDH1Q02338 343 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 HYAL4Q2M3T9 481 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 CARD17Q5XLA6 110 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 ARL9Q6T311 187 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 IGFL2Q6UWQ7 119 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 TRILQ7L0X0 811 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 HDDC2Q7Z4H3 204 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SYS1Q8N2H4 156 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 TMEM178AQ8NBL3 297 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 KBTBD8Q8NFY9 601 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 OR9K2Q8NGE7 335 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 OR6X1Q8NH79 312 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 OR10D3Q8NH80 312 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 DYNC2LI1Q8TCX1 351 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SNX33Q8WV41 574 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 MRPL48Q96GC5 212 aaKnown RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 RBP7Q96R05 134 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 MYCBPQ99417 103 aaPredicted RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 TM9SF2Q99805 663 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 TMED9Q9BVK6 235 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 SCNM1Q9BWG6 230 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 ING1Q9UK53 422 aaPredicted RBP9.37□□□□□ -0.91
SS18-217ENST00000580958 GRIP1Q9Y3R0 1128 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 CSAG2Q9Y5P2 127 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 KCNMB2Q9Y691 235 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 APC2O95996 2303 aa9.37□□□□□ -0.91
SS18-217ENST00000580958 FREM2Q5SZK8 3169 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 FREM1Q5H8C1 2179 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ACACAQ13085 2346 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ZNF726A6NNF4 738 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 NPIPA2E9PIF3 369 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 NPIPA3F8WFD2 350 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PSMD9O00233 223 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ZNF593O00488 134 aaPredicted RBP9.36□□□□□ -0.91
SS18-217ENST00000580958 CEACAM4O75871 244 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 VAMP5O95183 116 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 MPZL1O95297 269 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ITGB2P05107 769 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 SPARCP09486 303 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PGA4P0DJD7 388 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PGA3P0DJD8 388 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 OR8G3PP0DMU2 310 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 GABRA5P31644 462 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PSMB10P40306 273 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 CAPZA2P47755 286 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ENTPD1P49961 510 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 LHX2P50458 406 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 GBX2P52951 348 aaPredicted RBP9.36□□□□□ -0.91
SS18-217ENST00000580958 TAS2R43P59537 309 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PMP22Q01453 160 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 FABP5Q01469 135 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 GPR50Q13585 617 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 POU4F3Q15319 338 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 MEP1BQ16820 701 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 DGUOKQ16854 277 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PDSS1Q5T2R2 415 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ZNF684Q5T5D7 378 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 SLC25A47Q6Q0C1 308 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 RPTNQ6XPR3 784 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 LRRC69Q6ZNQ3 347 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 GDPGP1Q6ZNW5 385 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 CREB3L2Q70SY1 520 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 DPY19L4Q7Z388 723 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 SLC22A16Q86VW1 577 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 ZFP62Q8NB50 900 aaPredicted RBP9.36□□□□□ -0.91
SS18-217ENST00000580958 ROBO4Q8WZ75 1007 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 NSMAFQ92636 917 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 PELI1Q96FA3 418 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 SLC25A44Q96H78 314 aaPredicted RBP9.36□□□□□ -0.91
SS18-217ENST00000580958 ZNF845Q96IR2 970 aaPredicted RBP9.36□□□□□ -0.91
SS18-217ENST00000580958 AMELYQ99218 206 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 MNTQ99583 582 aa9.36□□□□□ -0.91
SS18-217ENST00000580958 MRPL13Q9BYD1 178 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms