RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 IGLV1-44P01699 117 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 CD14P08571 375 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 PATE4P0C8F1 98 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 CD99P14209 185 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 CALCRP30988 508 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 TTKP33981 857 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 GUCA1AP43080 201 aaPredicted RBP16.94■□□□□ 0.3
SS18-209ENST00000578595 RAB1AP62820 205 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 SGCAQ16586 387 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 IQCCQ4KMZ1 466 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 TMEM53Q6P2H8 277 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 SLC16A14Q7RTX9 510 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 CLDN22Q8N7P3 220 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 LRRC75AQ8NAA5 344 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 FBXO17Q96EF6 278 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 MS4A3Q96HJ5 214 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 Q96M85 177 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 ALG12Q9BV10 488 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 MRPL13Q9BYD1 178 aaKnown RBP16.94■□□□□ 0.3
SS18-209ENST00000578595 GSX2Q9BZM3 304 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 RERGLQ9H628 205 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 DENND2DQ9H6A0 471 aaPredicted RBP16.94■□□□□ 0.3
SS18-209ENST00000578595 CBLN4Q9NTU7 201 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 SIGLEC7Q9Y286 467 aa16.94■□□□□ 0.3
SS18-209ENST00000578595 TCRBV5S2A0A599 114 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 TNFRSF11BO00300 401 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 CDAP32320 146 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 LIMS1P48059 325 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 KRR1Q13601 381 aaKnown RBP16.93■□□□□ 0.3
SS18-209ENST00000578595 C3orf36Q3SXR2 165 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 SLC36A2Q495M3 483 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 ZNF544Q6NX49 715 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 ZNF627Q7L945 461 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 ARIH2OSQ8N7S6 290 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 FAM169BQ8N8A8 192 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 Q96MF0 132 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 KCNK17Q96T54 332 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 CACNG6Q9BXT2 260 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 MAGIXQ9H6Y5 334 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 CCNB1IP1Q9NPC3 277 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 RTTNQ86VV8 2226 aa16.93■□□□□ 0.3
SS18-209ENST00000578595 IGHV2OR16-5A0A0B4J2B6 119 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 TEX13CA0A0J9YWL9 993 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 SOCS2O14508 198 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 APOBEC3AP31941 199 aaPredicted RBP16.92■□□□□ 0.3
SS18-209ENST00000578595 GALK2Q01415 458 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 FHL1Q13642 323 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 FLOT2Q14254 428 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 RAB39AQ14964 217 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 HIST3H3Q16695 136 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 THEM4Q5T1C6 240 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 KRT80Q6KB66 452 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 DTX2Q86UW9 622 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 SPATA24Q86W54 205 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 OR4F15Q8NGB8 312 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 ZNF519Q8TB69 540 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 FNDC8Q8TC99 324 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 IGFBPL1Q8WX77 278 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 RASD2Q96D21 266 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 BTBD10Q9BSF8 475 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 REEP1Q9H902 201 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 SMURF2Q9HAU4 748 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 CA10Q9NS85 328 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 B3GNT2Q9NY97 397 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 ZNF224Q9NZL3 707 aa16.92■□□□□ 0.3
SS18-209ENST00000578595 DNAJC8O75937 253 aaPredicted RBP16.91■□□□□ 0.3
SS18-209ENST00000578595 KRT36O76013 467 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 PPP1R3DO95685 299 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 BMP4P12644 408 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 RPS6KA3P51812 740 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 HSF2Q03933 536 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 PPP1R8Q12972 351 aaKnown RBP16.91■□□□□ 0.3
SS18-209ENST00000578595 SNTB2Q13425 540 aaKnown RBP16.91■□□□□ 0.3
SS18-209ENST00000578595 DAG1Q14118 895 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 C10orf128Q5T292 105 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 SMARCD3Q6STE5 483 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 THSD4Q6ZMP0 1018 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 ZER1Q7Z7L7 766 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 IL17RDQ8NFM7 739 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 GNPDA2Q8TDQ7 276 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 POP5Q969H6 163 aaKnown RBP16.91■□□□□ 0.3
SS18-209ENST00000578595 ZNF701Q9NV72 531 aaPredicted RBP16.91■□□□□ 0.3
SS18-209ENST00000578595 FBXL3Q9UKT7 428 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 IER3IP1Q9Y5U9 82 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 U3KQV3 271 aa16.91■□□□□ 0.3
SS18-209ENST00000578595 IGKV1D-43A0A0B4J1Z2 117 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 VSTM5A8MXK1 200 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 CCNB2O95067 398 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 CD8AP01732 235 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 ZNF26P17031 533 aaPredicted RBP16.9■□□□□ 0.3
SS18-209ENST00000578595 SDHAP31040 664 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 SLC6A6P31641 620 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 ERFP50548 548 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 SNRPD2P62316 118 aaKnown RBP16.9■□□□□ 0.3
SS18-209ENST00000578595 PLP2Q04941 152 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 TRAP1Q12931 704 aaKnown RBP16.9■□□□□ 0.3
SS18-209ENST00000578595 MESTQ5EB52 335 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 OR2T5Q6IEZ7 315 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 SLC25A47Q6Q0C1 308 aa16.9■□□□□ 0.3
SS18-209ENST00000578595 DPPA2Q7Z7J5 298 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms