RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TNFSF12O43508 249 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 SCELO95171 688 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 APODP05090 189 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR9G9P0C7N8 305 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 UBCP0CG48 685 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 SNHG28P0DPA3 235 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 CD1DP15813 335 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 SELEP16581 610 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 POLR2EP19388 210 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 CD82P27701 267 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 RRM2P31350 389 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 HTR2BP41595 481 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 FOXG1P55316 489 aaPredicted RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 MAP3K7CLP57077 242 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 RPL8P62917 257 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 SELENBP1Q13228 472 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 TIGITQ495A1 244 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 C1orf220Q5T0J3 134 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 GPR157Q5UAW9 335 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 FAHD2BQ6P2I3 314 aaPredicted RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 RBMS3Q6XE24 437 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 PTAR1Q7Z6K3 402 aaPredicted RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR2L13Q8N349 312 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 TMEM178AQ8NBL3 297 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 TMEM104Q8NE00 496 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR5T2Q8NGG2 359 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR52I1Q8NGK6 324 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR10G8Q8NGN5 311 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR4A4PQ8NGN8 299 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR6S1Q8NH40 331 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 OR4C6Q8NH72 309 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 CLHC1Q8NHS4 586 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 ANP32BQ92688 251 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 CXorf40BQ96DE9 158 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 RBMXL1Q96E39 390 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 FAHD2AQ96GK7 314 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 IL17FQ96PD4 163 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 CNN2Q99439 309 aaKnown RBP4.79□□□□□ -1.64
VPS53-219ENST00000576019 C19orf24Q9BVV8 132 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 BBS2Q9BXC9 721 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 RHBGQ9H310 441 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 LIME1Q9H400 295 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 NT5DC2Q9H857 520 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 LRP4O75096 1905 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 TENM3Q9P273 2699 aa4.79□□□□□ -1.64
VPS53-219ENST00000576019 DENND4CQ5VZ89 1909 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 PLXNA2O75051 1894 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 MEX3AA1L020 520 aaKnown RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 MSGN1A6NI15 193 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 CCT8L1PA6NM43 557 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 C11orf98E9PRG8 122 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 FBP2O00757 339 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 AIREO43918 545 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ZBTB11O95625 1053 aaPredicted RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 NUDT3O95989 172 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 TOMM40O96008 361 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 PAK4O96013 591 aaPredicted RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 SERPINE2P07093 398 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 MMP12P39900 470 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 MAP3K8P41279 467 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 RFX3P48380 749 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 CCNG1P51959 295 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 RAB10P61026 200 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 TNNC1P63316 161 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 TPM4P67936 248 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 RIPPLY1Q0D2K3 151 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ST3GAL3Q11203 375 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ZNF177Q13360 481 aaPredicted RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 RCAN2Q14206 197 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 FAM189A2Q15884 450 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ZNF77Q15935 545 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 QRICH1Q2TAL8 776 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 DEFB109BQ30KR1 87 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 MS4A18Q3C1V0 323 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 CCDC137Q6PK04 289 aaKnown RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 CRIP3Q6Q6R5 217 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 APOOLQ6UXV4 268 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 SH2D5Q6ZV89 423 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 SLC16A14Q7RTX9 510 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 BPIFB2Q8N4F0 458 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 CATSPER1Q8NEC5 780 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 OR51L1Q8NGJ5 315 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 OR13C9Q8NGT0 318 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 SLC45A3Q96JT2 553 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 NSMCE3Q96MG7 304 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 ALKBH3Q96Q83 286 aaPredicted RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 GABRG3Q99928 467 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 TMEM246Q9BRR3 403 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 KRTAP4-9Q9BYQ8 210 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 C6orf106Q9H6K1 298 aaPredicted RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 SMYD3Q9H7B4 428 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 MRPL47Q9HD33 250 aaKnown RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 IL1RAPQ9NPH3 570 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 DYRK4Q9NR20 520 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 NANSQ9NR45 359 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 SPHK2Q9NRA0 654 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 CUTCQ9NTM9 273 aa4.78□□□□□ -1.64
VPS53-219ENST00000576019 MYEF2Q9P2K5 600 aaKnown RBP4.78□□□□□ -1.64
VPS53-219ENST00000576019 PHF11Q9UIL8 331 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms