RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 EEF1AKMT3Q96AZ1 226 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 FGGYQ96C11 551 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 DUS3LQ96G46 650 aaKnown RBP1.64□□□□□ -2.15
CHD3-217ENST00000574022 DNAJC1Q96KC8 554 aaKnown RBP1.64□□□□□ -2.15
CHD3-217ENST00000574022 FOXN4Q96NZ1 517 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 CATSPER2Q96P56 530 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 ZNF317Q96PQ6 595 aaPredicted RBP1.64□□□□□ -2.15
CHD3-217ENST00000574022 FOXC2Q99958 501 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 LZTS2Q9BRK4 669 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 NAT9Q9BTE0 207 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 LRRC61Q9BV99 259 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 OSBPL10Q9BXB5 764 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 MAP1LC3CQ9BXW4 147 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 HES7Q9BYE0 225 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 BARHL1Q9BZE3 327 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 GOLPH3Q9H4A6 298 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 ARMC7Q9H6L4 198 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 PANK3Q9H999 370 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 PATZ1Q9HBE1 687 aaKnown RBP1.64□□□□□ -2.15
CHD3-217ENST00000574022 MIEF1Q9NQG6 463 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 CTPS2Q9NRF8 586 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 ZNF275Q9NSD4 429 aaPredicted RBP1.64□□□□□ -2.15
CHD3-217ENST00000574022 NRBP2Q9NSY0 501 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 MCUBQ9NWR8 336 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 DUX4Q9UBX2 424 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 ZNF282Q9UDV7 671 aaPredicted RBP1.64□□□□□ -2.15
CHD3-217ENST00000574022 KLHL21Q9UJP4 597 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 GGA2Q9UJY4 613 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 WDR81Q562E7 1941 aa1.64□□□□□ -2.15
CHD3-217ENST00000574022 COL22A1Q8NFW1 1626 aaPredicted RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 IGHV1OR15-1A0A075B7D0 117 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ZNF816-ZNF321PA0A0X1KG74 233 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 RBMY1BA6NDE4 496 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 RBMY1EA6NEQ0 496 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 EPM2AB3EWF7 344 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ERVV-1B6SEH8 477 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 F6UB75 175 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SMKR1H3BMG3 65 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 K7N7A8 449 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 CDX4O14627 284 aaPredicted RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 TBL1XO60907 577 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 FKBP6O75344 327 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 MPDU1O75352 247 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 NDUFS6O75380 124 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 ZMPSTE24O75844 475 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 CDK14O94921 469 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 VENTXO95231 258 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 PLEKHA8P1O95397 391 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 TDP2O95551 362 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 RPN2P04844 631 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 KLK1P06870 262 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 RBMY1DP0C7P1 496 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 RBMY1A1P0DJD3 496 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 NQO2P16083 231 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 BGNP21810 368 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 AQP1P29972 269 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 IL2RGP31785 369 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 BTDP43251 543 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 GPR6P46095 362 aaPredicted RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 KLK7P49862 253 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SERPINB8P50452 374 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 RORCP51449 518 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SUB1P53999 127 aaKnown RBP eCLIP1.63□□□□□ -2.15
CHD3-217ENST00000574022 SELENOTP62341 195 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SP4Q02446 784 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SLC25A11Q02978 314 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 ZNF92Q03936 586 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ART3Q13508 389 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 RUNX3Q13761 415 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 CLINT1Q14677 625 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ATP6V1FQ16864 119 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 C5orf64Q2M2E5 130 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 QRICH1Q2TAL8 776 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 UTF1Q5T230 341 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ZNF470Q6ECI4 717 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 C6orf89Q6UWU4 347 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 CXCL17Q6UXB2 119 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 UNQ9370/PRO34162Q6UXP9 181 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 C2orf66Q6UXQ4 117 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 TMPRSS11AQ6ZMR5 421 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 LINC00336Q6ZUF6 198 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 USP43Q70EL4 1123 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 TRMT10CQ7L0Y3 403 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 PRSS41Q7RTY9 318 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 TMEM150AQ86TG1 271 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 NR2C2APQ86WQ0 139 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 CDC20BQ86Y33 519 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SELENOHQ8IZQ5 122 aaKnown RBP1.63□□□□□ -2.15
CHD3-217ENST00000574022 SYS1Q8N2H4 156 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 C6orf223Q8N319 242 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 C17orf78Q8N4C9 275 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 LINC00469Q8N7U9 141 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 SNX31Q8N9S9 440 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ZNF740Q8NDX6 193 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 OR10G3Q8NGC4 313 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 OR6K6Q8NGW6 343 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 OR6N2Q8NGY6 317 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 OR51F2Q8NH61 342 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ACER1Q8TDN7 264 aa1.63□□□□□ -2.15
CHD3-217ENST00000574022 ACOT11Q8WXI4 607 aaPredicted RBP1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms