RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 WISP3O95389 354 aaPredicted RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 H6PDO95479 791 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 C1QAP02745 245 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 RAF1P04049 648 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 UQCRHP07919 91 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 CT45A8P0DMV1 189 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 CT45A9P0DMV2 189 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PPIAL4FP0DN26 164 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PPIAL4GP0DN37 164 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 TAC1P20366 129 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 CCNOP22674 350 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ACKR3P25106 362 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 SERPINB1P30740 379 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 NAA10P41227 235 aaPredicted RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 APOBEC1P41238 236 aaKnown RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 REEP5Q00765 189 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 KLC1Q07866 573 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 KLRB1Q12918 225 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 RCAN2Q14206 197 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 GANABQ14697 944 aaKnown RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 OR4D1Q15615 310 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 CT45A2Q5DJT8 189 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 XKR6Q5GH73 641 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ARMCX4Q5H9R4 360 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 CEP78Q5JTW2 689 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 DCAF10Q5QP82 559 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ATP1A1-AS1Q5TC04 95 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ASB18Q6ZVZ8 466 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 BEST3Q8N1M1 668 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ZNF843Q8N446 348 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 METTL27Q8N6F8 245 aaPredicted RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 OR5M8Q8NGP6 311 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 OR51Q1Q8NH59 317 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 NT5CQ8TCD5 201 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 KCTD4Q8WVF5 259 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ST8SIA1Q92185 356 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 TAAR8Q969N4 342 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 C10orf90Q96M02 699 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 TECTBQ96PL2 329 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 OR4K3Q96R72 315 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 MRPL57Q9BQC6 102 aaKnown RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 SEMA4CQ9C0C4 833 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ROGDIQ9GZN7 287 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 GAL3ST2Q9H3Q3 398 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 SLA2Q9H6Q3 261 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 RANBP3Q9H6Z4 567 aaPredicted RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 RAB18Q9NP72 206 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ATPIF1Q9UII2 106 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 RNF24Q9Y225 148 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 WDR83OSQ9Y284 106 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 TMED7Q9Y3B3 224 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 WDR45Q9Y484 360 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PPIAL4AQ9Y536 164 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 ZNF462Q96JM2 2506 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 TRBV5-7A0A0A0MS05 114 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 NSG1A0A0A6YYJ2 146 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 SLC22A23A1A5C7 686 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 DPPA5A6NC42 116 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 IDSB3KWA1 339 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 WWP2O00308 870 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 DVL1O14640 695 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 BCKDKO14874 412 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 TAPBPO15533 448 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 P2RX6O15547 441 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 SPINT2O43291 252 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 UGDHO60701 494 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ALOX12BO75342 701 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 BMP10O95393 424 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 HPP00738 406 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ERCC1P07992 297 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 RNH1P13489 461 aaKnown RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 ZNF23P17027 643 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 IL1RNP18510 177 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 CRATP43155 626 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 NAA20P61599 178 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 IRX1P78414 480 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 BCL2A1Q16548 175 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 VWA2Q5GFL6 755 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 AGAP7PQ5VUJ5 663 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 LIPJQ5W064 366 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 MED27Q6P2C8 311 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 TRIM40Q6P9F5 258 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ZNF66Q6ZN08 573 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 TIFABQ6ZNK6 161 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 GPRIN3Q6ZVF9 776 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 COX15Q7KZN9 410 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 NDUFAF7Q7L592 441 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 VN1R4Q7Z5H5 301 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 PRSS58Q8IYP2 241 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ZADH2Q8N4Q0 377 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 THAP8Q8NA92 274 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 OR5AU1Q8NGC0 362 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 OR9A4Q8NGU2 314 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 SCARB1Q8WTV0 552 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 DCAKDQ8WVC6 231 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.37□□□□□ -1.55
VPS53-212ENST00000572259 SMPDL3BQ92485 455 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 ERGIC1Q969X5 290 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 LGALS12Q96DT0 336 aa5.37□□□□□ -1.55
VPS53-212ENST00000572259 GRAMD2BQ96HH9 432 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms