RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 NOX3Q9HBY0 568 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CRLF2Q9HC73 371 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 CMC2Q9NRP2 79 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 COQ3Q9NZJ6 369 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 NDRG4Q9ULP0 352 aaKnown RBP8.15□□□□□ -1.1
VPS35-211ENST00000569950 SPG11Q96JI7 2443 aa8.15□□□□□ -1.1
VPS35-211ENST00000569950 HEATR1Q9H583 2144 aaKnown RBP8.15□□□□□ -1.11
VPS35-211ENST00000569950 RAI1Q7Z5J4 1906 aaPredicted RBP8.15□□□□□ -1.11
VPS35-211ENST00000569950 A6NIZ1 184 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 SIAH2O43255 324 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 ARHGEF9O43307 516 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 DHHO43323 396 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 PRKYO43930 277 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 SEC14L2O76054 403 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 GPANK1O95872 356 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 IGHG1P01857 330 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 QDPRP09417 244 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 GAAP10253 952 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 CLUP10909 449 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 GABRB1P18505 474 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 SLC2A5P22732 501 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 POU1F1P28069 291 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 LOXP28300 417 aaPredicted RBP8.14□□□□□ -1.11
VPS35-211ENST00000569950 MPGP29372 298 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 RPS6KA3P51812 740 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 RAP1BP61224 184 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 RAP1AP62834 184 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 ADARB1P78563 741 aaKnown RBP8.14□□□□□ -1.11
VPS35-211ENST00000569950 ARF1P84077 181 aaKnown RBP8.14□□□□□ -1.11
VPS35-211ENST00000569950 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS35-211ENST00000569950 ITGADQ13349 1161 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 P2RY6Q15077 328 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 STK11Q15831 433 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 ZIK1Q3SY52 487 aaPredicted RBP8.14□□□□□ -1.11
VPS35-211ENST00000569950 C9orf135Q5VTT2 229 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 OTPQ5XKR4 325 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 FBXW10Q5XX13 1052 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 SLC27A4Q6P1M0 643 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 LYPD4Q6UWN0 246 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 BEND4Q6ZU67 534 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 ADCK1Q86TW2 530 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 PACRGLQ8N7B6 248 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 BBS1Q8NFJ9 593 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 OR52E2Q8NGJ4 325 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 OR1K1Q8NGR3 316 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 TEX47Q8TBZ9 253 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 MARVELD3Q96A59 401 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 EME1Q96AY2 570 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 HRASLS5Q96KN8 279 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 ZNF75AQ96N20 296 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 MUS81Q96NY9 551 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 NUAK2Q9H093 628 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 MED20Q9H944 212 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 KCNJ16Q9NPI9 418 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 HINT3Q9NQE9 182 aaKnown RBP8.14□□□□□ -1.11
VPS35-211ENST00000569950 ASB6Q9NWX5 421 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 ELOVL5Q9NYP7 299 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 TAS2R16Q9NYV7 291 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 KIF17Q9P2E2 1029 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 GRHPRQ9UBQ7 328 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 BAIAP2Q9UQB8 552 aa8.14□□□□□ -1.11
VPS35-211ENST00000569950 KLF2Q9Y5W3 355 aaPredicted RBP8.14□□□□□ -1.11
VPS35-211ENST00000569950 PDZD2O15018 2839 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 OR6C65A6NJZ3 312 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 FAM183AA6NL82 134 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 ZNF726A6NNF4 738 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 ZNF99A8MXY4 864 aaPredicted RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 H3BN98 237 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 SLC16A6O15403 523 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 AKAP8O43823 692 aaKnown RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 AHCYL1O43865 530 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 MPZL1O95297 269 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 TFP02787 698 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 CDAP32320 146 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 GGT2P36268 569 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 PTDSS1P48651 473 aaKnown RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 SORDQ00796 357 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 TAB1Q15750 504 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 HIKESHIQ53FT3 197 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 THEM4Q5T1C6 240 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 LEG1Q6P5S2 330 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 UGT2A3Q6UWM9 527 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 USP51Q70EK9 711 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 BCDIN3DQ7Z5W3 292 aaKnown RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 MYPOPQ86VE0 399 aaPredicted RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 GPR137CQ8N3F9 429 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 GALNT4Q8N4A0 578 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 OR52L1Q8NGH7 329 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 OR9Q1Q8NGQ5 310 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 KISS1RQ969F8 398 aaPredicted RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 S100PBPQ96BU1 408 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 ULBP2Q9BZM5 246 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 RACGAP1Q9H0H5 632 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 RIBC2Q9H4K1 309 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 ZNF556Q9HAH1 456 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 TMEM38BQ9NVV0 291 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 FAM118AQ9NWS6 357 aa8.13□□□□□ -1.11
VPS35-211ENST00000569950 MRPL22Q9NWU5 206 aaKnown RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 SMPD3Q9NY59 655 aaPredicted RBP8.13□□□□□ -1.11
VPS35-211ENST00000569950 B3GNT2Q9NY97 397 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms