RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 DLSTP36957 453 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 PLAURQ03405 335 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 SLC16A9Q7RTY1 509 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 DEFB119Q8N690 84 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 C15orf40Q8WUR7 153 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 CCDC74AQ96AQ1 378 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 TREM1Q9NP99 234 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 EMC3Q9P0I2 261 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 POLR1DQ9Y2S0 133 aa13.17□□□□□ -0.3
VPS35-210ENST00000568784 KIF26BQ2KJY2 2108 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 VCANP13611 3396 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 USP34Q70CQ2 3546 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 NKX2-2O95096 273 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 CELA2BP08218 269 aaPredicted RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 SLC35E2P0CK97 266 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 NTSR1P30989 418 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 VEGFBP49765 207 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 EIF2B1Q14232 305 aaKnown RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 C1QL3Q5VWW1 255 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 GALNTL5Q7Z4T8 443 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 INO80EQ8NBZ0 244 aaPredicted RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 WNT2BQ93097 391 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 KTI12Q96EK9 354 aaPredicted RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 AMELYQ99218 206 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 SLC38A3Q99624 504 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 APMAPQ9HDC9 416 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 TAS2R8Q9NYW2 309 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 A0A087WUJ7 227 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 ZNF736B4DX44 427 aaPredicted RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 CTDSPLO15194 276 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 OIP5O43482 229 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 SULT1B1O43704 296 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 CALCBP10092 127 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 RBM34P42696 430 aaKnown RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 Q6ZSR6 202 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 ZNF584Q8IVC4 421 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 OR1J2Q8NGS2 313 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 C12orf10Q9HB07 376 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 FAM186AA6NE01 2351 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 A0A087WV62 115 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 CYR61O00622 381 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 ELFN2Q5R3F8 820 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 C3orf33Q6P1S2 294 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 SPICQ8N5J4 248 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 BCORP1Q8N888 145 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 SLC37A2Q8TED4 501 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 LPAR4Q99677 370 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 VRK1Q99986 396 aaPredicted RBP13.16□□□□□ -0.3
VPS35-210ENST00000568784 OR10A5Q9H207 317 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 EVA1AQ9H8M9 152 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 SERTAD3Q9UJW9 196 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 RABL2BQ9UNT1 228 aa13.16□□□□□ -0.3
VPS35-210ENST00000568784 ASXL3Q9C0F0 2248 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 H7C417 338 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 PRKXP51817 358 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 HTRA4P83105 476 aaPredicted RBP13.15□□□□□ -0.3
VPS35-210ENST00000568784 HHEXQ03014 270 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 NFATC4Q14934 902 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 CEBPEQ15744 281 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 TMEM196Q5HYL7 178 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 RGS7BPQ6MZT1 257 aaPredicted RBP13.15□□□□□ -0.3
VPS35-210ENST00000568784 LINC00346Q8IVM7 164 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 THAP6Q8TBB0 222 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 NT5CQ8TCD5 201 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 ANKRD9Q96BM1 317 aaPredicted RBP13.15□□□□□ -0.3
VPS35-210ENST00000568784 MTFP1Q9UDX5 166 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 PILRAQ9UKJ1 303 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 SNRPGP15A8MWD9 76 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 XRCC3O43542 346 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 OR7A5Q15622 319 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 GLT8D1Q68CQ7 371 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 HAGHLQ6PII5 290 aaPredicted RBP13.15□□□□□ -0.3
VPS35-210ENST00000568784 CDH26Q8IXH8 852 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 GABRG1Q8N1C3 465 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 PAQR8Q8TEZ7 354 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 THAP3Q8WTV1 239 aaPredicted RBP13.15□□□□□ -0.3
VPS35-210ENST00000568784 ZNF416Q9BWM5 594 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 TMEM231Q9H6L2 316 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 LYRM4Q9HD34 91 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 UNC13CQ8NB66 2214 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 A0A0J9YY10 115 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 MFSD2BA6NFX1 497 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 C17orf105B2RV13 164 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 H7C2Y5 167 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 CTAG2O75638 210 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 OR4E1P0C645 316 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 ICAM2P13598 275 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 RAB38P57729 211 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 CD226Q15762 336 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 ETFDHQ16134 617 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 RNASE10Q5GAN6 216 aaKnown RBP13.15□□□□□ -0.3
VPS35-210ENST00000568784 WDR38Q5JTN6 314 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 FHL5Q5TD97 284 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 PARM1Q6UWI2 310 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 TAS2R4Q9NYW5 299 aa13.15□□□□□ -0.3
VPS35-210ENST00000568784 KIF26AQ9ULI4 1882 aaPredicted RBP13.14□□□□□ -0.31
VPS35-210ENST00000568784 FADS1O60427 444 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ALOX12BO75342 701 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ITGA5P08648 1049 aa13.14□□□□□ -0.31
VPS35-210ENST00000568784 ARL4DP49703 201 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms