RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FILIP1LQ4L180 1135 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 HSP90AA5PQ58FG0 334 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 FAM78AQ5JUQ0 283 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 SPECC1LQ69YQ0 1117 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 GALNT17Q6IS24 598 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 STRADAQ7RTN6 431 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 ASCL5Q7RTU5 278 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 WDR86Q86TI4 376 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 ZNF557Q8N988 423 aaPredicted RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 HSD17B11Q8NBQ5 300 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 NECAP1Q8NC96 275 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 GMCL1P1Q8NEA9 526 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 OR9A2Q8NGT5 310 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 PYROXD1Q8WU10 500 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 RNF139Q8WU17 664 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 SCFD1Q8WVM8 642 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 THRSPQ92748 146 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 EMG1Q92979 244 aaKnown RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 C12orf42Q96LP6 360 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 C16orf45Q96MC5 204 aaPredicted RBP1.25□□□□□ -2.21
VPS35-207ENST00000568191 OR8B4Q96RC9 309 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 CAMK2N2Q96S95 79 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 TRIM62Q9BVG3 475 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 PPA2Q9H2U2 334 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 AZI2Q9H6S1 392 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 CRCT1Q9UGL9 99 aa1.25□□□□□ -2.21
VPS35-207ENST00000568191 NID2Q14112 1375 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 CHST1O43916 411 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 FCMRO60667 390 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 GABARAPO95166 117 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 IGHV2-5P01817 119 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 KRT8P05787 483 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 HSMCR30P0CW71 290 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 SLC2A5P22732 501 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 RORAP35398 523 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 MAGEA8P43361 318 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 CCR8P51685 355 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 SRSF5Q13243 272 aaKnown RBP1.24□□□□□ -2.21
VPS35-207ENST00000568191 DPYSL2Q16555 572 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 SNRNP35Q16560 246 aaKnown RBP1.24□□□□□ -2.21
VPS35-207ENST00000568191 ZSCAN26Q16670 478 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 RABL6Q3YEC7 729 aaPredicted RBP1.24□□□□□ -2.21
VPS35-207ENST00000568191 CCDC152Q4G0S7 254 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 ZNF493Q6ZR52 646 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 NUDCD3Q8IVD9 361 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 SDR9C7Q8NEX9 313 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 OR5D13Q8NGL4 314 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 PHOSPHO2Q8TCD6 241 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 TMEM54Q969K7 222 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 C10orf35Q96D05 121 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 NARS2Q96I59 477 aaKnown RBP1.24□□□□□ -2.21
VPS35-207ENST00000568191 PSKH2Q96QS6 385 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 ZSCAN5AQ9BUG6 496 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 PARP12Q9H0J9 701 aaKnown RBP1.24□□□□□ -2.21
VPS35-207ENST00000568191 ISYNA1Q9NPH2 558 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 BFARQ9NZS9 450 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 ZNF230Q9UIE0 474 aaPredicted RBP1.24□□□□□ -2.21
VPS35-207ENST00000568191 ADAM28Q9UKQ2 775 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 KIF3AQ9Y496 699 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 AP1M2Q9Y6Q5 423 aa1.24□□□□□ -2.21
VPS35-207ENST00000568191 CENPJQ9HC77 1338 aaPredicted RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 IGHV3-74A0A0B4J1X5 117 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 A0A1B0GVL5 298 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 SNNO75324 88 aaPredicted RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 UPK3AO75631 287 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 GUCA1CO95843 209 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 IGHDP01880 384 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 FABP3P05413 133 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 ZNF806P0C7X5 589 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 TCN1P20061 433 aaPredicted RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 MAS1LP35410 378 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 ATP5C1P36542 298 aaKnown RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 CCT3P49368 545 aaKnown RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 PRRX1P54821 245 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 UBE2HP62256 183 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 PPIL2Q13356 520 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 DGUOKQ16854 277 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 KLHL38Q2WGJ6 581 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 AP1ARQ63HQ0 302 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 SAXO2Q658L1 398 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 TMEM205Q6UW68 189 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 KDM7AQ6ZMT4 941 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 PRSS58Q8IYP2 241 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 ZFP41Q8N8Y5 198 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 ZCCHC13Q8WW36 166 aaKnown RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 TVP23CQ96ET8 276 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 MYCBPQ99417 103 aaPredicted RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 SORT1Q99523 831 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 RNF5Q99942 180 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 OSBPL10Q9BXB5 764 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 GON7Q9BXV9 100 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 RPF2Q9H7B2 306 aaKnown RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 DDX19AQ9NUU7 478 aaKnown RBP1.23□□□□□ -2.21
VPS35-207ENST00000568191 SNX6Q9UNH7 406 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 SCN1AP35498 2009 aa1.23□□□□□ -2.21
VPS35-207ENST00000568191 TSPOAP1O95153 1857 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 CDHR2Q9BYE9 1310 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 A0A1W2PPV9 198 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 A8MUU9 505 aa1.22□□□□□ -2.21
VPS35-207ENST00000568191 C16orf90A8MZG2 172 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms