RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RACGAP1Q9H0H5 632 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 NANOGQ9H9S0 305 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 SLCO1C1Q9NYB5 712 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 SH3GLB1Q9Y371 365 aa16.05■□□□□ 0.16
CLN3-218ENST00000565688 OR5F1O95221 314 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 NPPAP01160 153 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 IFNA14P01570 189 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 FAM157BP0CG42 384 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 NAT2P11245 290 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 ZNF250P15622 560 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 FUT1P19526 365 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 SRSF2Q01130 221 aaKnown RBP16.04■□□□□ 0.16
CLN3-218ENST00000565688 RPL18Q07020 188 aaKnown RBP16.04■□□□□ 0.16
CLN3-218ENST00000565688 PCGF3Q3KNV8 242 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 COQ5Q5HYK3 327 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 CARM1Q86X55 608 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 RBM15BQ8NDT2 890 aaKnown RBP16.04■□□□□ 0.16
CLN3-218ENST00000565688 NOXO1Q8NFA2 376 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 OR8J3Q8NGG0 315 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 ZNF519Q8TB69 540 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 SYNPRQ8TBG9 265 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 SNX33Q8WV41 574 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 C11orf40Q8WZ69 217 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 SGTBQ96EQ0 304 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 ZNF347Q96SE7 839 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 VIPAS39Q9H9C1 493 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 HINT3Q9NQE9 182 aaKnown RBP16.04■□□□□ 0.16
CLN3-218ENST00000565688 INIPQ9NRY2 104 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 ZNF275Q9NSD4 429 aaPredicted RBP16.04■□□□□ 0.16
CLN3-218ENST00000565688 TAAR3PQ9P1P4 343 aa16.04■□□□□ 0.16
CLN3-218ENST00000565688 ANK2Q01484 3957 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 IGLV3-9A0A075B6K5 115 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 FBP2O00757 339 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 PPIHO43447 177 aaKnown RBP16.03■□□□□ 0.16
CLN3-218ENST00000565688 OR7A10O76100 309 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 F13BP05160 661 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 LCKP06239 509 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 THRBP10828 461 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 ACADSP16219 412 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 UGT2B15P54855 530 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 MOGQ16653 247 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 RABL3Q5HYI8 236 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 ERICH5Q6P6B1 374 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 TMEM154Q6P9G4 183 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 CALHM3Q86XJ0 350 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 PAQR4Q8N4S7 273 aaPredicted RBP16.03■□□□□ 0.16
CLN3-218ENST00000565688 SYT14Q8NB59 555 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 CLDND2Q8NHS1 167 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 TMEM239Q8WW34 195 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 LIPHQ8WWY8 451 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 ASB10Q8WXI3 467 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 LRRC58Q96CX6 371 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 KCNN2Q9H2S1 579 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 SMURF2Q9HAU4 748 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 RIMS3Q9UJD0 308 aa16.03■□□□□ 0.16
CLN3-218ENST00000565688 NPIPB13A6NJU9 1138 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 C17orf100A8MU93 164 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 NPIPB4C9JG80 1138 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 RP2O75695 350 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 NCR1O76036 304 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 MT-ND5P03915 603 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 NR2C1P13056 603 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 CCL2P13500 99 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 APLNRP35414 380 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 ZNF133P52736 654 aaPredicted RBP16.02■□□□□ 0.16
CLN3-218ENST00000565688 UCP2P55851 309 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 RUNX1T1Q06455 604 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 SCGB2A2Q13296 93 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 C10orf128Q5T292 105 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 DEF8Q6ZN54 512 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 RINLQ6ZS11 566 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 NKAIN4Q8IVV8 208 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 PFN4Q8NHR9 129 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 TMEM255BQ8WV15 326 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 YIPF5Q969M3 257 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 TMEM186Q96B77 213 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 NARFLQ9H6Q4 476 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 SIAEQ9HAT2 523 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 NKIRAS2Q9NYR9 191 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 METRNQ9UJH8 293 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 MED31Q9Y3C7 131 aa16.02■□□□□ 0.16
CLN3-218ENST00000565688 GMNCA6NCL1 334 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 BBIP1A8MTZ0 92 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 TRMUO75648 421 aaKnown RBP16.01■□□□□ 0.15
CLN3-218ENST00000565688 CLPTM1O96005 669 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 MSMBP08118 114 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 TSPAN19P0C672 248 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 AQP2P41181 271 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 MRPS34P82930 218 aaKnown RBP16.01■□□□□ 0.15
CLN3-218ENST00000565688 MYBPC1Q00872 1141 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 TEKQ02763 1124 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 HSF2Q03933 536 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 ALKBH6Q3KRA9 238 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 LRRC18Q8N456 261 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 OR51F2Q8NH61 342 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 TMEM120AQ9BXJ8 343 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 OR51B6Q9H340 312 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 C20orf141Q9NUB4 165 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 HIF1ANQ9NWT6 349 aa16.01■□□□□ 0.15
CLN3-218ENST00000565688 GRIP1Q9Y3R0 1128 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms