RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SIKE1Q9BRV8 207 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 POLR2J2Q9GZM3 115 aaKnown RBP14.64□□□□□ -0.07
CLN3-216ENST00000565316 POLR2J3Q9H1A7 115 aaKnown RBP14.64□□□□□ -0.07
CLN3-216ENST00000565316 RNF121Q9H920 327 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 NANOGQ9H9S0 305 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 CDH20Q9HBT6 801 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 HINT3Q9NQE9 182 aaKnown RBP14.64□□□□□ -0.07
CLN3-216ENST00000565316 NKIRAS2Q9NYR9 191 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 TAAR3PQ9P1P4 343 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 GPR160Q9UJ42 338 aa14.64□□□□□ -0.07
CLN3-216ENST00000565316 A0A1W2PRG6 482 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 HMGB1P1B2RPK0 211 aaPredicted RBP14.63□□□□□ -0.07
CLN3-216ENST00000565316 PPIHO43447 177 aaKnown RBP14.63□□□□□ -0.07
CLN3-216ENST00000565316 OR7A10O76100 309 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 MSMBP08118 114 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 VIMP08670 466 aaKnown RBP14.63□□□□□ -0.07
CLN3-216ENST00000565316 FAM157BP0CG42 384 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 GAAP10253 952 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 UMPSP11172 480 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 ITGA2P17301 1181 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 FUT1P19526 365 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 RAD52P43351 418 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 MAGEB1P43366 347 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 ZNF84P51523 738 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 UCP2P55851 309 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 KLF3P57682 345 aaPredicted RBP14.63□□□□□ -0.07
CLN3-216ENST00000565316 CLRN1P58418 232 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 SELENOVP59797 346 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 NKPD1Q17RQ9 610 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 TBC1D28Q2M2D7 210 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 PCGF3Q3KNV8 242 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 RINLQ6ZS11 566 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 NOXO1Q8NFA2 376 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 BCL2L14Q9BZR8 327 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 HIF1ANQ9NWT6 349 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 SLCO1C1Q9NYB5 712 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 TREM2Q9NZC2 230 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 METRNQ9UJH8 293 aa14.63□□□□□ -0.07
CLN3-216ENST00000565316 A0A0A6YYJ9 748 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 NPIPB13A6NJU9 1138 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 NPIPB4C9JG80 1138 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 EDF1O60869 148 aaKnown RBP14.62□□□□□ -0.07
CLN3-216ENST00000565316 TRMUO75648 421 aaKnown RBP14.62□□□□□ -0.07
CLN3-216ENST00000565316 OR5F1O95221 314 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 F13BP05160 661 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 ACADSP16219 412 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 ERVS71-1P61550 626 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 CYLC2Q14093 348 aaPredicted RBP14.62□□□□□ -0.07
CLN3-216ENST00000565316 ALKBH6Q3KRA9 238 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 ARMC4Q5T2S8 1044 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 TMEM154Q6P9G4 183 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 HDDC2Q7Z4H3 204 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 NKAIN4Q8IVV8 208 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 SYT14Q8NB59 555 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 RBM15BQ8NDT2 890 aaKnown RBP14.62□□□□□ -0.07
CLN3-216ENST00000565316 PFN4Q8NHR9 129 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 C11orf40Q8WZ69 217 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 NMD3Q96D46 503 aaKnown RBP14.62□□□□□ -0.07
CLN3-216ENST00000565316 SGTBQ96EQ0 304 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 TSPAN32Q96QS1 320 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 LRMDAQ9H2I8 198 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 NARFLQ9H6Q4 476 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 SIAEQ9HAT2 523 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 NPHS2Q9NP85 383 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 INIPQ9NRY2 104 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 BAG5Q9UL15 447 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 SH3GLB1Q9Y371 365 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 UGT2A1Q9Y4X1 527 aa14.62□□□□□ -0.07
CLN3-216ENST00000565316 IQCMA0A1B0GVH7 501 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 MCIDASD6RGH6 385 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 FXYD1O00168 92 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 LCKP06239 509 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 AQP2P41181 271 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 CRYBB2P43320 205 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 DAP3P51398 398 aaKnown RBP14.61□□□□□ -0.07
CLN3-216ENST00000565316 MRPS34P82930 218 aaKnown RBP14.61□□□□□ -0.07
CLN3-216ENST00000565316 MYBPC1Q00872 1141 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 PLP2Q04941 152 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 RABL3Q5HYI8 236 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 MEX3DQ86XN8 651 aaKnown RBP14.61□□□□□ -0.07
CLN3-216ENST00000565316 CPEB3Q8NE35 698 aaKnown RBP14.61□□□□□ -0.07
CLN3-216ENST00000565316 OR8J3Q8NGG0 315 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 OR51F2Q8NH61 342 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 TMEM255BQ8WV15 326 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 ZFAND2BQ8WV99 257 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 TMEM239Q8WW34 195 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 SH3GL1Q99961 368 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 SMURF2Q9HAU4 748 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 C20orf141Q9NUB4 165 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 STX18Q9P2W9 335 aaKnown RBP14.61□□□□□ -0.07
CLN3-216ENST00000565316 RIMS3Q9UJD0 308 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 GRIP1Q9Y3R0 1128 aa14.61□□□□□ -0.07
CLN3-216ENST00000565316 A0A0G2JND7 137 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 HAX1O00165 279 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 IGHV3-13P01766 116 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 THRBP10828 461 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 TAS2R41P59536 307 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 CCL8P80075 99 aa14.6□□□□□ -0.07
CLN3-216ENST00000565316 PIN1Q13526 163 aaPredicted RBP14.6□□□□□ -0.07
CLN3-216ENST00000565316 MOGQ16653 247 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms