RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	PGD	P52209	483 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	PNLIPRP2	P54317	469 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	SSBP1	Q04837	148 aa	Known RBP	10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	RAB12	Q6IQ22	244 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	ABHD13	Q7L211	337 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	FCRLA	Q7L513	359 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	GDF7	Q7Z4P5	450 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	NKAIN4	Q8IVV8	208 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	BEST3	Q8N1M1	668 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	ZNF561	Q8N587	486 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	OR4C16	Q8NGL9	310 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	OR2A1	Q8NGT9	310 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	MOAP1	Q96BY2	351 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	ELF4	Q99607	663 aa	Predicted RBP	10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	GFI1	Q99684	422 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	PCBD2	Q9H0N5	130 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	QRSL1	Q9H0R6	528 aa	Known RBP	10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	OR52D1	Q9H346	318 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	SMCO4	Q9NRQ5	59 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	KLHL28	Q9NXS3	571 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	UPB1	Q9UBR1	384 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	DMD	P11532	3685 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	MYO15A	Q9UKN7	3530 aa		10.06	□□□□□ -0.8
TCF4-222	ENST00000564228	OR5H14	A6NHG9	310 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	TMEM200C	A6NKL6	621 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	PATE3	B3GLJ2	98 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	AKAIN1	P0CW23	69 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	SRM	P19623	302 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	CDK2	P24941	298 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ABCD3	P28288	659 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	PEBP1	P30086	187 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	BSG	P35613	385 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	PRR5	P85299	388 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	C11orf87	Q6NUJ2	197 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	FAM180B	Q6P0A1	224 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	NAA40	Q86UY6	237 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	STX12	Q86Y82	276 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	OR5M8	Q8NGP6	311 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	RPS4Y2	Q8TD47	263 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ZFPM2	Q8WW38	1151 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	SLC41A3	Q96GZ6	507 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ZNF75A	Q96N20	296 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	PRAP1	Q96NZ9	151 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	EDEM2	Q9BV94	578 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	HCAR1	Q9BXC0	346 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	RHBG	Q9H310	441 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ZCCHC3	Q9NUD5	404 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	SLC35A3	Q9Y2D2	325 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	OR10H1	Q9Y4A9	318 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228		V9GY05	133 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	CACNA1H	O95180	2353 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	CDC42EP2	O14613	210 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	PIP5K1C	O60331	668 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ICOSLG	O75144	302 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	SLC34A2	O95436	690 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ACTL6A	O96019	429 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	AGA	P20933	346 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	TRHR	P34981	398 aa	Predicted RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	PPM1F	P49593	454 aa	Predicted RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	STXBP1	P61764	594 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	TRA2B	P62995	288 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	SIRPA	P78324	504 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	KHDRBS2	Q5VWX1	349 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	TMEM71	Q6P5X7	295 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	NDUFAF7	Q7L592	441 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ARL14	Q8N4G2	192 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	WDSUB1	Q8N9V3	476 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ZNF740	Q8NDX6	193 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	STK35	Q8TDR2	534 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	TCTEX1D2	Q8WW35	142 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	EXOSC8	Q96B26	276 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ZDHHC12	Q96GR4	267 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	HS6ST2	Q96MM7	605 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	OR14A2	Q96R54	314 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	MNT	Q99583	582 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	MRPS30	Q9NP92	439 aa	Known RBP	10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	SDHAF3	Q9NRP4	125 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	UQCC1	Q9NVA1	299 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	COMMD9	Q9P000	198 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	GHRL	Q9UBU3	117 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	OR5V1	Q9UGF6	321 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228	ADAM29	Q9UKF5	820 aa		10.05	□□□□□ -0.8
TCF4-222	ENST00000564228		A0A1W2PPK0	400 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	FEZF1	A0PJY2	475 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	GGT3P	A6NGU5	568 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	PPM1D	O15297	605 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	RCBTB2	O95199	551 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	ITGB2	P05107	769 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	BMP7	P18075	431 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	RCC1	P18754	421 aa	Predicted RBP	10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	CERS1	P27544	350 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	DLST	P36957	453 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	RGS8	P57771	180 aa	Predicted RBP	10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	FOXK2	Q01167	660 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	NAAA	Q02083	359 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	PRDX1	Q06830	199 aa	Known RBP	10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	SHB	Q15464	509 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	HLA-B	Q31612	363 aa		10.04	□□□□□ -0.8
TCF4-222	ENST00000564228	PCGF3	Q3KNV8	242 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms