RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PDZD9Q8IXQ8 264 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 EXD3Q8N9H8 876 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 GPR148Q8TDV2 347 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 AIFM2Q9BRQ8 373 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 G6PC3Q9BUM1 346 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 POFUT1Q9H488 388 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 SLC22A13Q9Y226 551 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 FANCMQ8IYD8 2048 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 M0QYG6 137 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 SDC3O75056 442 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 HLA-DQA2P01906 255 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 FGF2P09038 288 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 CSF1P09603 554 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 LIPCP11150 499 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 HPGDP15428 266 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 CSRP1P21291 193 aaKnown RBP11.97□□□□□ -0.49
CLN3-210ENST00000563874 ACHEP22303 614 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 EGR4Q05215 589 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 C2orf76Q3KRA6 126 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 WDR38Q5JTN6 314 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 ARHGAP40Q5TG30 622 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 B3GNTL1Q67FW5 361 aaPredicted RBP11.97□□□□□ -0.49
CLN3-210ENST00000563874 FAM122CQ6P4D5 195 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 C17orf107Q6ZR85 190 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 OR52H1Q8NGJ2 320 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 OR6N1Q8NGY5 312 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 ZNF417Q8TAU3 575 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 TSPAN32Q96QS1 320 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 ATG5Q9H1Y0 275 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 MMP25Q9NPA2 562 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 MKL2Q9ULH7 1088 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 HIF3AQ9Y2N7 669 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 RWDD3Q9Y3V2 267 aa11.97□□□□□ -0.49
CLN3-210ENST00000563874 A0A1W2PQF6 199 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 C11orf98E9PRG8 122 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 PLGP00747 810 aaPredicted RBP11.96□□□□□ -0.49
CLN3-210ENST00000563874 AKAIN1P0CW23 69 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 NTSR1P30989 418 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 PRSS3P35030 304 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 KIR3DL2P43630 455 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 LRRC37A5PQ49AS3 106 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 TMEM205Q6UW68 189 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 DNM1P46Q6ZS02 220 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 PM20D2Q8IYS1 436 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 BOLLQ8N9W6 283 aaKnown RBP11.96□□□□□ -0.49
CLN3-210ENST00000563874 C15orf40Q8WUR7 153 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 GAS2L1Q99501 681 aaPredicted RBP11.96□□□□□ -0.49
CLN3-210ENST00000563874 DPYSL5Q9BPU6 564 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 APMAPQ9HDC9 416 aa11.96□□□□□ -0.49
CLN3-210ENST00000563874 TRIOO75962 3097 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 A0A1B0GTQ1 180 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 CSN2P05814 226 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 ALOX5APP20292 161 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 MST1P26927 711 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 MNDAP41218 407 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 GMFBP60983 142 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 BEX5Q5H9J7 111 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 CDH26Q8IXH8 852 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 ZNF595Q8IYB9 648 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 LRRC75AQ8NAA5 344 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 OR5M9Q8NGP3 310 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 SLC37A2Q8TED4 501 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 FAM3DQ96BQ1 224 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 DGAT2Q96PD7 388 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 GPX7Q96SL4 187 aaPredicted RBP11.96□□□□□ -0.5
CLN3-210ENST00000563874 OR10A5Q9H207 317 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 FBXO4Q9UKT5 387 aa11.96□□□□□ -0.5
CLN3-210ENST00000563874 TRBV5-7A0A0A0MS05 114 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 TOR1AO14656 332 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 SLC25A1P53007 311 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 DMWDQ09019 674 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 GPM6BQ13491 265 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 ISXQ2M1V0 245 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 STEAP1BQ6NZ63 245 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 TFAP2EQ6VUC0 442 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 MED25Q71SY5 747 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 ZNF627Q7L945 461 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 ZNF578Q96N58 590 aaPredicted RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 RBM14Q96PK6 669 aaKnown RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 PRAMEF2O60811 474 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 KLF8O95600 359 aaPredicted RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 PLATP00750 562 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 CA3P07451 260 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 TSPAN7P41732 249 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 GPR3P46089 330 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 C1orf61Q13536 156 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 MEP1BQ16820 701 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 C1QL3Q5VWW1 255 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 FAM109BQ6ICB4 259 aaPredicted RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 ATG4DQ86TL0 474 aaPredicted RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 PTDSS2Q9BVG9 487 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 TINAGL1Q9GZM7 467 aaPredicted RBP11.95□□□□□ -0.5
CLN3-210ENST00000563874 EVA1AQ9H8M9 152 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 SFXN1Q9H9B4 322 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 ELOVL3Q9HB03 270 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 MED9Q9NWA0 146 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 TAS2R8Q9NYW2 309 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 SEC16AO15027 2179 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 LOC100509620A0A075B734 347 aa11.95□□□□□ -0.5
CLN3-210ENST00000563874 TMEM212A6NML5 194 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms