RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 EVA1AQ9H8M9 152 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 SEC14L4Q9UDX3 406 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 NUFIP1Q9UHK0 495 aaKnown RBP8.33□□□□□ -1.08
VPS39-205ENST00000562258 GPR160Q9UJ42 338 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 A4GNTQ9UNA3 340 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 TP53TG5Q9Y2B4 290 aa8.33□□□□□ -1.08
VPS39-205ENST00000562258 PHYHO14832 338 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 TGFBR2P37173 567 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RBM34P42696 430 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 CBLBQ13191 982 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 AWAT2Q6E213 333 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ZNF704Q6ZNC4 412 aaPredicted RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 SERPINA12Q8IW75 414 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 FAM109AQ8N4B1 249 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 MS4A15Q8N5U1 240 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 C11orf40Q8WZ69 217 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RND1Q92730 232 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 DCLRE1CQ96SD1 692 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 TEAD3Q99594 435 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ZNF385DQ9H6B1 395 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RASD1Q9Y272 281 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 GPANK1O95872 356 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 PTHP01270 115 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 TMIGD3P0DMS9 266 aaPredicted RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 CFL1P23528 166 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 GNG2P59768 71 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 NCS1P62166 190 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 TUBA3CQ13748 450 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 PCOLCEQ15113 449 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS39-205ENST00000562258 ARTNQ5T4W7 220 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ZNF468Q5VIY5 522 aaPredicted RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 TUBA3EQ6PEY2 450 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 TUSC5Q8IXB3 177 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CLDN22Q8N7P3 220 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 BBS1Q8NFJ9 593 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CPNE2Q96FN4 548 aaPredicted RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 SARGQ9BW04 601 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 A1L4Q6 167 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 WNT11O96014 354 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CCL2P13500 99 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SDHAP31040 664 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SUMO3P55854 103 aaPredicted RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 SNTB1Q13884 538 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 LTC4SQ16873 150 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ACSM3Q53FZ2 586 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SLC25A24Q6NUK1 477 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RDH10Q8IZV5 341 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ZNF615Q8N8J6 731 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CHDHQ8NE62 594 aaPredicted RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 FNDC8Q8TC99 324 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SLCO4A1Q96BD0 722 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 PDCD1LG2Q9BQ51 273 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 PDCD10Q9BUL8 212 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SPATA2Q9UM82 520 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 A0A0B4J2E0 115 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 A0A1B0GX12 115 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SERTM1A2A2V5 107 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 TSC22D2O75157 780 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CALCBP10092 127 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 MSR1P21757 451 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 PSMD7P51665 324 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RAB1AP62820 205 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ARF1P84077 181 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 TEKQ02763 1124 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 E2F2Q14209 437 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RAB39AQ14964 217 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ZNF74Q16587 644 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 CEP78Q5JTW2 689 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 MZT2BQ6NZ67 158 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 USP43Q70EL4 1123 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 SLC7A6Q92536 515 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 GGHQ92820 318 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 LGALS12Q96DT0 336 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 ANKRD19PQ9H560 264 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 BABAM2Q9NXR7 383 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 RALYQ9UKM9 306 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 FZR1Q9UM11 496 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 PCDHGA10Q9Y5H3 936 aa8.32□□□□□ -1.08
VPS39-205ENST00000562258 HEATR1Q9H583 2144 aaKnown RBP8.32□□□□□ -1.08
VPS39-205ENST00000562258 C5orf42Q9H799 3197 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 CHD7Q9P2D1 2997 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 OR6C65A6NJZ3 312 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 NTN3O00634 580 aaPredicted RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 SSNA1O43805 119 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 FZD7O75084 574 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 CRTAPO75718 401 aaPredicted RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 SMIM10L1P0DMW3 83 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 C7P10643 843 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 MYF6P23409 242 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 RAB40BQ12829 278 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 BLMHQ13867 455 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 TMEM244Q5VVB8 128 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 KANSL1Q7Z3B3 1105 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 CALHM3Q86XJ0 350 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 DND1Q8IYX4 353 aaKnown RBP8.31□□□□□ -1.08
VPS39-205ENST00000562258 CCDC54Q8NEL0 328 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 TMIGD2Q96BF3 282 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 SMIM10Q96HG1 83 aa8.31□□□□□ -1.08
VPS39-205ENST00000562258 ZNF582Q96NG8 517 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms