RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FAIMQ9NVQ4 179 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 NPAP1Q9NZP6 1156 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 EMC3Q9P0I2 261 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 COPZ2Q9P299 210 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 ZMIZ1Q9ULJ6 1067 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 GRIP1Q9Y3R0 1128 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 R4GN57 208 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 HEATR5AQ86XA9 2040 aa6.75□□□□□ -1.33
VPS39-204ENST00000561818 BDP1A6H8Y1 2624 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 A0A0A6YYH2 397 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ZC3H12DA2A288 527 aaKnown RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 A6NJ64 397 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 C4orf47A7E2U8 309 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ZNF878C9JN71 531 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 H3BML4 177 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 AIPO00170 330 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 TNFRSF10AO00220 468 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 TERTO14746 1132 aaKnown RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 SULT1B1O43704 296 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SELENOFO60613 162 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 TNFSF15O95150 251 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 GYPBP06028 91 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PRKAR1AP10644 381 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 CLUP10909 449 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 LIPCP11150 499 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 CEACAM1P13688 526 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 IFNGR1P15260 489 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 CD46P15529 392 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 FSTP19883 344 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PTNP21246 168 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ACHEP22303 614 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 LAP3P28838 519 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 TNFSF8P32971 234 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PTGS2P35354 604 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 EIF2S3P41091 472 aaKnown RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 NBL1P41271 181 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ZNF133P52736 654 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 PCBD1P61457 104 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 H3F3AP84243 136 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 OC90Q02509 493 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 ECH1Q13011 328 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SF3A2Q15428 464 aaKnown RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 HYAL4Q2M3T9 481 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 CCDC92Q53HC0 331 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 DCAF10Q5QP82 559 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 AGAP7PQ5VUJ5 663 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 LIPNQ5VXI9 398 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 FCRLBQ6BAA4 426 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 LCN10Q6JVE6 187 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 FAM199XQ6PEV8 388 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 ARSKQ6UWY0 536 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 FAM131AQ6UXB0 335 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 UNQ9370/PRO34162Q6UXP9 181 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ABHD12BQ7Z5M8 362 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 CDH26Q8IXH8 852 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PM20D2Q8IYS1 436 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SHISA5Q8N114 240 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 MEIOBQ8N635 442 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 WDSUB1Q8N9V3 476 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SLC26A10Q8NG04 563 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 OR14L1PQ8NHC6 308 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 THEM6Q8WUY1 208 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ATOH1Q92858 354 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 PMEPA1Q969W9 287 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ITPKCQ96DU7 683 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 AGAP4Q96P64 663 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 RTN4RQ9BZR6 473 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SLC22A4Q9H015 551 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 TPK1Q9H3S4 243 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ZCCHC4Q9H5U6 513 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 ISG20L2Q9H9L3 353 aaKnown RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 RNF122Q9H9V4 155 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SRA1Q9HD15 236 aaKnown RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 ACOXLQ9NUZ1 547 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PARPBPQ9NWS1 579 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 LRFN1Q9P244 771 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PLEKHB1Q9UF11 243 aaPredicted RBP6.74□□□□□ -1.33
VPS39-204ENST00000561818 ATPIF1Q9UII2 106 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 SPATA2Q9UM82 520 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 FOXJ3Q9UPW0 622 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 POLR1DQ9Y2S0 133 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 PMF1-BGLAPU3KQ54 211 aa6.74□□□□□ -1.33
VPS39-204ENST00000561818 TRBV5-5A0A0J9YX44 114 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 TRABD2BA6NFA1 517 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ANXA2P2A6NMY6 339 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 LRRN3E7EW58 273 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 MS4A18H0YCH9 400 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ZNF593O00488 134 aaPredicted RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 CTDSPLO15194 276 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SLC43A1O75387 559 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 UBL3O95164 117 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ABHD16AO95870 558 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ECDO95905 644 aaPredicted RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 ACTL6AO96019 429 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 HLA-DQB1P01920 261 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 ANXA2P07355 339 aaKnown RBP6.73□□□□□ -1.33
VPS39-204ENST00000561818 ADRA2AP08913 450 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 SPARCP09486 303 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 H2BFMP0C1H6 154 aa6.73□□□□□ -1.33
VPS39-204ENST00000561818 PGA4P0DJD7 388 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms