RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 OR8S1Q8NH09 359 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CPT1CQ8TCG5 803 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DIRAS2Q96HU8 199 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 IMMP1LQ96LU5 166 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF582Q96NG8 517 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 LRFN5Q96NI6 719 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 NAA50Q9GZZ1 169 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OR51E2Q9H255 320 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 FANCFQ9NPI8 374 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DEPPQ9NTK1 212 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 UFSP2Q9NUQ7 469 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PARPBPQ9NWS1 579 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DNAJB11Q9UBS4 358 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 AK6Q9Y3D8 172 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 LRRC42Q9Y546 428 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 LRRK1Q38SD2 2015 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 GTF3C1Q12789 2109 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ISPDA4D126 451 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PINLYPA6NC86 204 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 A6NIZ1 184 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 P2RY10O00398 339 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 HSPB6O14558 160 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 NPR2P20594 1047 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 GZMMP51124 257 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 RAP1BP61224 184 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 RAP1AP62834 184 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 RAB39AQ14964 217 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 NTRK2Q16620 822 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DGUOKQ16854 277 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PYDC2Q56P42 97 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 B3GNT6Q6ZMB0 384 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SERPINA12Q8IW75 414 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OR13C3Q8NGS6 347 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 NEIL3Q8TAT5 605 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 HDAC2Q92769 488 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM41AQ96HV5 264 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 TEAD3Q99594 435 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 VRK1Q99986 396 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 BATF3Q9NR55 127 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PROCRQ9UNN8 238 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 LIPGQ9Y5X9 500 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 KCNMB2Q9Y691 235 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 BPTFQ12830 3046 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PLCE1Q9P212 2302 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 NOTCH3Q9UM47 2321 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MED19A0JLT2 244 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 IRGMA1A4Y4 181 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 C5orf49A4QMS7 147 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 RER1O15258 196 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 AQP8O94778 261 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CSTBP04080 98 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CAPNS1P04632 268 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CTLA4P16410 223 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 NAGAP17050 411 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SPI1P17947 270 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 GADD45AP24522 165 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MNDAP41218 407 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 FRKP42685 505 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CDKN2AP42771 156 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 RAC1P63000 192 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 IL18Q14116 193 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 E2F2Q14209 437 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PRR30Q53SZ7 412 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 HES5Q5TA89 166 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 BCL2L15Q5TBC7 163 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF691Q5VV52 312 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 GPR139Q6DWJ6 353 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF773Q6PK81 442 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DPY19L2P2Q6ZN68 376 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 HDDC2Q7Z4H3 204 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OR13C5Q8NGS8 318 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OR13C9Q8NGT0 318 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZPLD1Q8TCW7 415 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ELP5Q8TE02 316 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 FAR1Q8WVX9 515 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF285Q96NJ3 590 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 MBOAT4Q96T53 435 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OCSTAMPQ9BR26 566 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 HCAR1Q9BXC0 346 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DCSTAMPQ9H295 470 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 CHMP1AQ9HD42 196 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DYNLRB1Q9NP97 96 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OBP2BQ9NPH6 170 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 EIF3KQ9UBQ5 218 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DHDHQ9UQ10 334 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SLC22A13Q9Y226 551 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 SIGLEC7Q9Y286 467 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM14AQ9Y6G1 99 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 DOCK10Q96BY6 2186 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 PHF3Q92576 2039 aaKnown RBP4.88□□□□□ -1.63
VPS13C-209ENST00000560637 FREM3P0C091 2139 aa4.88□□□□□ -1.63
VPS13C-209ENST00000560637 OR6C68A6NDL8 312 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 TRMUO75648 421 aaKnown RBP4.87□□□□□ -1.63
VPS13C-209ENST00000560637 CYB5AP00167 134 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 NGFRP08138 427 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 DBHP09172 617 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 RAB40ALP0C0E4 278 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 MYF6P23409 242 aa4.87□□□□□ -1.63
VPS13C-209ENST00000560637 SDHAP31040 664 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms