RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 C20orf204Q6ZNR8 217 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TUBA1AQ71U36 451 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 SYT14Q8NB59 555 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 KBTBD8Q8NFY9 601 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 LILRB1Q8NHL6 650 aaPredicted RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 ZNF519Q8TB69 540 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 HDAC2Q92769 488 aaKnown RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 MBD6Q96DN6 1003 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 RDH12Q96NR8 316 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TSPAN32Q96QS1 320 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 KCNK17Q96T54 332 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 ALG12Q9BV10 488 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 C1QTNF6Q9BXI9 259 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 NDEL1Q9GZM8 345 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 VNN3Q9NY84 501 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 TMCC3Q9ULS5 477 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 EDARQ9UNE0 448 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 SIGLEC7Q9Y286 467 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 POFUT2Q9Y2G5 429 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 PRRC2AP48634 2157 aaKnown RBP8.17□□□□□ -1.1
LDLR-211ENST00000560173 USF3Q68DE3 2245 aa8.17□□□□□ -1.1
LDLR-211ENST00000560173 MAGEA13PA6NCF6 341 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 A6NIZ1 184 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 SHISA9B4DS77 424 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 M0R1B8 84 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 TNFRSF11BO00300 401 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ABCD4O14678 606 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 OR10H3O60404 316 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 NDUFB2O95178 105 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 IGLV1-44P01699 117 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 CD14P08571 375 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 QDPRP09417 244 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 HOXB4P17483 251 aaPredicted RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 CD53P19397 219 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 FLNAP21333 2647 aaKnown RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 PAX7P23759 505 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 RPL4P36578 427 aaKnown RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 ACVR1BP36896 505 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 IFNGR2P38484 337 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 GSSP48637 474 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 IST1P53990 364 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 FXYD6P3P58550 94 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 RAP1BP61224 184 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 RAP1AP62834 184 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ERVK-25P63136 954 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 SPOCK1Q08629 439 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 KEAP1Q14145 624 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 RFX4Q33E94 735 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 C3orf36Q3SXR2 165 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ZNF672Q499Z4 452 aaPredicted RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 C10orf128Q5T292 105 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 OR2T5Q6IEZ7 315 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ZNF770Q6IQ21 691 aaPredicted RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 C1orf94Q6P1W5 598 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 PGBD2Q6P3X8 592 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 THSD4Q6ZMP0 1018 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 FAM122BQ7Z309 247 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 MDP1Q86V88 176 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ZDHHC13Q8IUH4 622 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 NAV3Q8IVL0 2385 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 CCDC36Q8IYA8 594 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ARIH2OSQ8N7S6 290 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ZNF611Q8N823 705 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 FAM169BQ8N8A8 192 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 OR2T29Q8NH02 315 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 FANK1Q8TC84 345 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 IGFBPL1Q8WX77 278 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 AKAP1Q92667 903 aaKnown RBP eCLIP8.16□□□□□ -1.1
LDLR-211ENST00000560173 NEUROG1Q92886 237 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 MCHR2Q969V1 340 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 RADILQ96JH8 1075 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ZNF570Q96NI8 536 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 SLC38A2Q96QD8 506 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 GPX7Q96SL4 187 aaPredicted RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 FOXB1Q99853 325 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 KATNB1Q9BVA0 655 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 SMURF2Q9HAU4 748 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 MOV10Q9HCE1 1003 aaKnown RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 TMEM38BQ9NVV0 291 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 CRNNQ9UBG3 495 aaPredicted RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 ZNF346Q9UL40 294 aaKnown RBP8.16□□□□□ -1.1
LDLR-211ENST00000560173 MGAT4BQ9UQ53 548 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 ADAM18Q9Y3Q7 739 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 UGT2A1Q9Y4X1 527 aa8.16□□□□□ -1.1
LDLR-211ENST00000560173 IGKV1D-43A0A0B4J1Z2 117 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 IGHV1-18A0A0C4DH31 117 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 CCNB2O95067 398 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 SLC2A10O95528 541 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 CST1P01037 141 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 IGKV3-15P01624 115 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 HLA-HP01893 362 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 RPSAP08865 295 aaKnown RBP8.15□□□□□ -1.1
LDLR-211ENST00000560173 CECR9P0C854 216 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 NR2C1P13056 603 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 CBR1P16152 277 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 AQP4P55087 323 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 CDH11P55287 796 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 MYBPC1Q00872 1141 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 FMODQ06828 376 aa8.15□□□□□ -1.1
LDLR-211ENST00000560173 CD47Q08722 323 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms