RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 RAD23AP54725 363 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 EFNB1P98172 346 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 HIKESHIQ53FT3 197 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 C10orf128Q5T292 105 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 BHLHA15Q7RTS1 189 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-227ENST00000557269 PACRGLQ8N7B6 248 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 OR9Q1Q8NGQ5 310 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 OR1K1Q8NGR3 316 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 BCL2L2Q92843 193 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-227ENST00000557269 PTP4A1Q93096 173 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 KISS1RQ969F8 398 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-227ENST00000557269 UBE2FQ969M7 185 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 S100PBPQ96BU1 408 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 MUS81Q96NY9 551 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 RBP7Q96R05 134 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 NMNAT2Q9BZQ4 307 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 RERGLQ9H628 205 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 SRA1Q9HD15 236 aaKnown RBP11.25□□□□□ -0.61
SHMT2-227ENST00000557269 B3GAT2Q9NPZ5 323 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 RPRD1BQ9NQG5 326 aaKnown RBP11.25□□□□□ -0.61
SHMT2-227ENST00000557269 CMC2Q9NRP2 79 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 FAM118AQ9NWS6 357 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 TVP23BQ9NYZ1 205 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 KLHL21Q9UJP4 597 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 ORC6Q9Y5N6 252 aa11.25□□□□□ -0.61
SHMT2-227ENST00000557269 DOPEY1Q5JWR5 2465 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 IGLV1-36A0A0B4J1U3 117 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 A0A1W2PR80 420 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 RIIAD1A6NNX1 92 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF99A8MXY4 864 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 AHCYL1O43865 530 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 MPZL1O95297 269 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 RENP00797 406 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 HMGN1P05114 100 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 B4GALT1P15291 398 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 PYCR1P32322 319 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 PTDSS1P48651 473 aaKnown RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 PCYT1AP49585 367 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 ABHD12BQ7Z5M8 362 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 BCDIN3DQ7Z5W3 292 aaKnown RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 WDR31Q8NA23 367 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 LINC01560Q8TB33 94 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 PSMG3-AS1Q96PY0 264 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 SNX18Q96RF0 628 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 FOXB1Q99853 325 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 ACTR6Q9GZN1 396 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 HINT3Q9NQE9 182 aaKnown RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 TMEM38BQ9NVV0 291 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 SMPD3Q9NY59 655 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 ENOPH1Q9UHY7 261 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 B9D1Q9UPM9 204 aa11.24□□□□□ -0.61
SHMT2-227ENST00000557269 COA3Q9Y2R0 106 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 KLF2Q9Y5W3 355 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 GCN1Q92616 2671 aaKnown RBP11.24□□□□□ -0.61
SHMT2-227ENST00000557269 CIB4A0PJX0 185 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF503-AS2A6NEH8 195 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 PRSS44E7EML9 344 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 IFNGP01579 166 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 GYPBP06028 91 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 THBDP07204 575 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 IGFBP2P18065 325 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 IL32P24001 234 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 GGT2P36268 569 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 TUBA1BP68363 451 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 TUBA4AP68366 448 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 SNAPC1Q16533 368 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 PLBD1Q6P4A8 553 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 KLHL24Q6TFL4 600 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 TUBA1AQ71U36 451 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF627Q7L945 461 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 ZBTB46Q86UZ6 589 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 CPOQ8IVL8 374 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 TCEANCQ8N8B7 351 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 ACBD4Q8NC06 268 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 BBS1Q8NFJ9 593 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 OR51L1Q8NGJ5 315 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 FGFBP3Q8TAT2 258 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 NABP1Q96AH0 204 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 HRASLS5Q96KN8 279 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 WFIKKN1Q96NZ8 548 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 IL4I1Q96RQ9 567 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 HDHD5Q9BXW7 423 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 C8orf4Q9NR00 106 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 AASSQ9UDR5 926 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 NDRG4Q9ULP0 352 aaKnown RBP11.23□□□□□ -0.61
SHMT2-227ENST00000557269 CACNA1CQ13936 2221 aa11.23□□□□□ -0.61
SHMT2-227ENST00000557269 LOC100130705A0A1B0GUX0 176 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 A0A1W2PPL8 197 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 OR5H1A6NKK0 313 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 KHDRBS3O75525 346 aaKnown RBP11.22□□□□□ -0.61
SHMT2-227ENST00000557269 CLIC3O95833 236 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 PATE4P0C8F1 98 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF3P17036 446 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SPI1P17947 270 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 COL8A1P27658 744 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 ZNF84P51523 738 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SLC25A1P53007 311 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 AQP4P55087 323 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 SORDQ00796 357 aa11.22□□□□□ -0.61
SHMT2-227ENST00000557269 STK11Q15831 433 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms