RNA–Protein interactions for RNA: ENST00000556063.1

TDP1-214, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 1,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-214ENST00000556063 CDK5Q00535 292 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 GLO1Q04760 184 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 RUNX1T1Q06455 604 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.72□□□□□ -1.33
TDP1-214ENST00000556063 LGALS3BPQ08380 585 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 FAM27E3Q08E93 113 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 PTGES3Q15185 160 aaKnown RBP6.72□□□□□ -1.33
TDP1-214ENST00000556063 CDSNQ15517 529 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 SNAPC1Q16533 368 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 HIST3H3Q16695 136 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 NRN1LQ496H8 165 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 C10orf128Q5T292 105 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 OGFRL1Q5TC84 451 aaPredicted RBP6.72□□□□□ -1.33
TDP1-214ENST00000556063 C9orf135Q5VTT2 229 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 SLX4IPQ5VYV7 408 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 ANKRD34AQ69YU3 496 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 LRFN4Q6PJG9 635 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 STAC2Q6ZMT1 411 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 ZNF813Q6ZN06 617 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 DEPDC4Q8N2C3 294 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 GALNT4Q8N4A0 578 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 IQCF1Q8N6M8 205 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 OR4Q3Q8NH05 313 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 NANOS1Q8WY41 292 aaKnown RBP6.72□□□□□ -1.33
TDP1-214ENST00000556063 HSD17B8Q92506 261 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 NSMAFQ92636 917 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 MUS81Q96NY9 551 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 NMNAT3Q96T66 252 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 SLC29A1Q99808 456 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 FOXB1Q99853 325 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 MED18Q9BUE0 208 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 ACTR6Q9GZN1 396 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 RERGLQ9H628 205 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 CMC2Q9NRP2 79 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 IMPAD1Q9NX62 359 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 ZNF226Q9NYT6 803 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 VSX1Q9NZR4 365 aaPredicted RBP6.72□□□□□ -1.33
TDP1-214ENST00000556063 H2AFY2Q9P0M6 372 aaPredicted RBP6.72□□□□□ -1.33
TDP1-214ENST00000556063 AMDHD2Q9Y303 409 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 FKBP7Q9Y680 259 aa6.72□□□□□ -1.33
TDP1-214ENST00000556063 CADP27708 2225 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 RTTNQ86VV8 2226 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 A0A1W2PPL8 197 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 OR5H1A6NKK0 313 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 ZAR1LA6NP61 321 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 PRR23D1E9PI22 279 aaPredicted RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 H7C1C5 153 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SURF4O15260 269 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 ATP6V1G2O95670 118 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 WNT11O96014 354 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 ITGA5P08648 1049 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 PRR23D2P0DMB1 279 aaPredicted RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 OR8G3PP0DMU2 310 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 KIR2DL3P43628 341 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SLC25A1P53007 311 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 LCN6P62502 163 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 MRPS34P82930 218 aaKnown RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 TFF3Q07654 80 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 CRMP1Q14194 572 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 GABRA6Q16445 453 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 ZIK1Q3SY52 487 aaPredicted RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 TBRG1Q3YBR2 411 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 TIMM23BQ5SRD1 257 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 PHYHD1Q5SRE7 291 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 TMEM236Q5W0B7 351 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 TTC23Q5W5X9 447 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 LPCAT4Q643R3 524 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 ACSM5Q6NUN0 579 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SLC25A47Q6Q0C1 308 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 MEX3BQ6ZN04 569 aaKnown RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 PTCHD4Q6ZW05 846 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 ZNF627Q7L945 461 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 GLB1L2Q8IW92 636 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SLC37A3Q8NCC5 494 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 NPEPL1Q8NDH3 523 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SDR9C7Q8NEX9 313 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 OR1K1Q8NGR3 316 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 FAM222BQ8WU58 562 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 TRUB1Q8WWH5 349 aaKnown RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 BCL2L2Q92843 193 aaPredicted RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 OTULINQ96BN8 352 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 S100PBPQ96BU1 408 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 NMD3Q96D46 503 aaKnown RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 DACH2Q96NX9 599 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 WACQ9BTA9 647 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 NUAK2Q9H093 628 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 RACGAP1Q9H0H5 632 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 RASSF4Q9H2L5 321 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 FN3KQ9H479 309 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 TOR3AQ9H497 397 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SEC61A2Q9H9S3 476 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 SRA1Q9HD15 236 aaKnown RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 RPRD1BQ9NQG5 326 aaKnown RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 TMEM38BQ9NVV0 291 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 TVP23BQ9NYZ1 205 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 NKX1-2Q9UD57 310 aaPredicted RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 MOKQ9UQ07 419 aa6.71□□□□□ -1.34
TDP1-214ENST00000556063 USP9YO00507 2555 aaPredicted RBP6.71□□□□□ -1.34
TDP1-214ENST00000556063 PTPN13Q12923 2485 aa6.7□□□□□ -1.34
TDP1-214ENST00000556063 FLNCQ14315 2725 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms