RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 C19orf84I3L1E1 186 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 DCTN6O00399 190 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 SLC16A7O60669 478 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 ZNF3P17036 446 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 UGT2B10P36537 528 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 PTDSS1P48651 473 aaKnown RBP18.62■□□□□ 0.57
VPS29-206ENST00000549578 ZNF133P52736 654 aaPredicted RBP18.62■□□□□ 0.57
VPS29-206ENST00000549578 ARF1P84077 181 aaKnown RBP18.62■□□□□ 0.57
VPS29-206ENST00000549578 SNTB1Q13884 538 aaKnown RBP18.62■□□□□ 0.57
VPS29-206ENST00000549578 ETFDHQ16134 617 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 SNAPC1Q16533 368 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 C10orf128Q5T292 105 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 C12orf73Q69YU5 71 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 SLC25A47Q6Q0C1 308 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 BHLHA15Q7RTS1 189 aaPredicted RBP18.62■□□□□ 0.57
VPS29-206ENST00000549578 HTRA1Q92743 480 aa18.62■□□□□ 0.57
VPS29-206ENST00000549578 A1L4Q6 167 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 FAM183AA6NL82 134 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 ZNF99A8MXY4 864 aaPredicted RBP18.61■□□□□ 0.57
VPS29-206ENST00000549578 C16orf97H3BN30 126 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 IL32P24001 234 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 OR9Q1Q8NGQ5 310 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 PLEKHA8Q96JA3 519 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 RDH12Q96NR8 316 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 FOXN4Q96NZ1 517 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 SLC38A2Q96QD8 506 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 VCXQ9H320 206 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 SRA1Q9HD15 236 aaKnown RBP18.61■□□□□ 0.57
VPS29-206ENST00000549578 UGT2A1Q9Y4X1 527 aa18.61■□□□□ 0.57
VPS29-206ENST00000549578 E9PQ18 207 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 PRKYO43930 277 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 CDAP32320 146 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 ZNF84P51523 738 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 SH3BGRP55822 239 aaPredicted RBP18.6■□□□□ 0.57
VPS29-206ENST00000549578 TGFBR3Q03167 851 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 OR6V1Q8N148 313 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 OR1K1Q8NGR3 316 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 OTULINQ96BN8 352 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 S100PBPQ96BU1 408 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 HRASLS5Q96KN8 279 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 FOXB1Q99853 325 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 ACTR6Q9GZN1 396 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 MED20Q9H944 212 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 FAM118AQ9NWS6 357 aa18.6■□□□□ 0.57
VPS29-206ENST00000549578 A0A096LPE4 126 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 A0A1W2PPZ6 126 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 FAM171A2A8MVW0 826 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 CLDN1O95832 211 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 CLUP10909 449 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 B4GALT1P15291 398 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 GABRA6Q16445 453 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 HCAR1Q9BXC0 346 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 HDHD5Q9BXW7 423 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 PRRG3Q9BZD7 231 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 NELFAQ9H3P2 528 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 HINT3Q9NQE9 182 aaKnown RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 B9D1Q9UPM9 204 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 KLF2Q9Y5W3 355 aaPredicted RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 SPTAN1Q13813 2472 aaKnown RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 IGLV1-36A0A0B4J1U3 117 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 A0A1W2PPL8 197 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 PRSS44E7EML9 344 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 KHDRBS3O75525 346 aaKnown RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 GYPBP06028 91 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 GGT2P36268 569 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 PCYT1AP49585 367 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 STK11Q15831 433 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 HIKESHIQ53FT3 197 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 PLBD1Q6P4A8 553 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 DNM1P34Q6PK57 102 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 KLHL24Q6TFL4 600 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 ZNF813Q6ZN06 617 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 TCEANCQ8N8B7 351 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 C1orf162Q8NEQ5 155 aaPredicted RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 STEAP2Q8NFT2 490 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 FAM81AQ8TBF8 368 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 BCL2L2Q92843 193 aaPredicted RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 MUS81Q96NY9 551 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 PITX2Q99697 317 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 NMNAT2Q9BZQ4 307 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 TMEM38BQ9NVV0 291 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 NDRG4Q9ULP0 352 aaKnown RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 COA3Q9Y2R0 106 aaPredicted RBP18.59■□□□□ 0.57
VPS29-206ENST00000549578 GMPPBQ9Y5P6 360 aa18.59■□□□□ 0.57
VPS29-206ENST00000549578 LOC100130705A0A1B0GUX0 176 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 PRR23D1E9PI22 279 aaPredicted RBP18.58■□□□□ 0.56
VPS29-206ENST00000549578 GPANK1O95872 356 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 PRR23D2P0DMB1 279 aaPredicted RBP18.58■□□□□ 0.56
VPS29-206ENST00000549578 PAICSP22234 425 aaKnown RBP18.58■□□□□ 0.56
VPS29-206ENST00000549578 CRABP1P29762 137 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 PYCR1P32322 319 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 AQP4P55087 323 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 SORDQ00796 357 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 OR7E24Q6IFN5 339 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 ANKRD16Q6P6B7 361 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 C22orf34Q6ZV56 151 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 ZBTB46Q86UZ6 589 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 CPOQ8IVL8 374 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 ZNF555Q8NEP9 628 aa18.58■□□□□ 0.56
VPS29-206ENST00000549578 OR51L1Q8NGJ5 315 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms