RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CAMKMTQ7Z624 323 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 SPICQ8N5J4 248 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 OR5T1Q8NG75 326 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 NUBPLQ8TB37 319 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 ZDHHC12Q96GR4 267 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 Q96M85 177 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 STEAP1Q9UHE8 339 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 NEUROG3Q9Y4Z2 214 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 IFNA10P01566 189 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 IRS1P35568 1242 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF41P51814 821 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CSNK2A1P68400 391 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 ACY1Q03154 408 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 SPIN3Q5JUX0 258 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF836Q6ZNA1 936 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 LINC00469Q8N7U9 141 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CSNK2A3Q8NEV1 391 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 THRSPQ92748 146 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 TSACCQ96A04 125 aaPredicted RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 TGM7Q96PF1 710 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 RHOFQ9HBH0 211 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 IL23AQ9NPF7 189 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 APOBEC3BQ9UH17 382 aaKnown RBP13.05□□□□□ -0.32
LIMS1-215ENST00000544547 KCND3Q9UK17 655 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 FBXO7Q9Y3I1 522 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CDC42EP2O14613 210 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 BCL2L11O43521 198 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CLEC3AO75596 197 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 STK17BO94768 372 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 H2BFMP0C1H6 154 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 NFYBP25208 207 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CRYBA2P53672 197 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 RIN1Q13671 783 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 MEF2DQ14814 521 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 CLEC9AQ6UXN8 241 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF561Q8N587 486 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 SELENOIQ9C0D9 397 aa13.05□□□□□ -0.32
LIMS1-215ENST00000544547 SEC14L5O43304 696 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 IL5P05113 134 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 CTSAP10619 480 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 CAV2P51636 162 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 B2MP61769 119 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 ALKBH1Q13686 389 aaKnown RBP13.04□□□□□ -0.32
LIMS1-215ENST00000544547 FAM189A2Q15884 450 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 C21orf62-AS1Q17RA5 79 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 ACTBL2Q562R1 376 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 NCMAPQ5T1S8 102 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 STAC2Q6ZMT1 411 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 DPPA2Q7Z7J5 298 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 ETFBKMTQ8IXQ9 262 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PUSL1Q8N0Z8 303 aaKnown RBP13.04□□□□□ -0.32
LIMS1-215ENST00000544547 NPRL2Q8WTW4 380 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 TMEM234Q8WY98 164 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PNPLA2Q96AD5 504 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SLC17A9Q9BYT1 436 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PITHD1Q9GZP4 211 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-215ENST00000544547 TM7SF3Q9NS93 570 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 CCDC163A0A0D9SF12 145 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SLC5A10A0PJK1 596 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PLPP2O43688 288 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 NME2P1O60361 137 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SERPINF1P36955 418 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 MECP2P51608 486 aaKnown RBP13.04□□□□□ -0.32
LIMS1-215ENST00000544547 ATP1B3P54709 279 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 NHLRC3Q5JS37 347 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SOHLH1Q5JUK2 328 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 COMTD1Q86VU5 262 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PLPP6Q8IY26 295 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SLC39A11Q8N1S5 342 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 HSD17B11Q8NBQ5 300 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SLC35A4Q96G79 324 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 DEFB126Q9BYW3 111 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 KCNIP3Q9Y2W7 256 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PIKFYVEQ9Y2I7 2098 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PPP1R2P9O14990 202 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 HSPA12AO43301 675 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 HEXBP07686 556 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 DAOP14920 347 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PLA2G7Q13093 441 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 HIST2H3AQ71DI3 136 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 RNF113BQ8IZP6 322 aaKnown RBP13.04□□□□□ -0.32
LIMS1-215ENST00000544547 PELI1Q96FA3 418 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 SLC41A2Q96JW4 573 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 KCNJ15Q99712 375 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF251Q9BRH9 671 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 CTSFQ9UBX1 484 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 ING1Q9UK53 422 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-215ENST00000544547 B3GALT1Q9Y5Z6 326 aa13.04□□□□□ -0.32
LIMS1-215ENST00000544547 A0A087WV62 115 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 K7EPK0 472 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 PMP2P02689 132 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 HTR2CP28335 458 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 NPY4RP50391 375 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 IDH3GP51553 393 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-215ENST00000544547 SLC39A5Q6ZMH5 540 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 CPXM2Q8N436 756 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 FAM71E2Q8N5Q1 922 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 AMER3Q8N944 861 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 CDRT4Q8N9R6 151 aa13.03□□□□□ -0.32
LIMS1-215ENST00000544547 C20orf141Q9NUB4 165 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms