RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	IL12B	P29460	328 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	PSMD4	P55036	377 aa	Known RBP	13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	GGTLC2	Q14390	218 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	EBP	Q15125	230 aa	Known RBP	13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	OVCH2	Q7RTZ1	564 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF527	Q8NB42	609 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	UXS1	Q8NBZ7	420 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	PCDHB16	Q9NRJ7	776 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	KLK11	Q9UBX7	282 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	TRAV8-7	A0A075B6U6	113 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	TEX46	H3BTG2	121 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF217	O75362	1048 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	PIAS2	O75928	621 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	ADRA2C	P18825	462 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	BLVRA	P53004	296 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	NXPH1	P58417	271 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	PLCXD2	Q0VAA5	305 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	SQSTM1	Q13501	440 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	SERTAD2	Q14140	314 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	TCTE1	Q5JU00	501 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	LRRN1	Q6UXK5	716 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	TPRA1	Q86W33	373 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	WDFY1	Q8IWB7	410 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	SLC38A9	Q8NBW4	561 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	ZDHHC12	Q96GR4	267 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	CHIA	Q9BZP6	476 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	VN1R1	Q9GZP7	353 aa		13.36	□□□□□ -0.27
DDX55-209	ENST00000542286	ZDBF2	Q9HCK1	2354 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	POM121C	A8CG34	1229 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	GDF9	O60383	454 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	GMDS	O60547	372 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	MPZL1	O95297	269 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	DCN	P07585	359 aa	Known RBP	13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	HLA-DOB	P13765	273 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	POU3F2	P20265	443 aa	Predicted RBP	13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	PRPS1	P60891	318 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	FGD2	Q7Z6J4	655 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	CMIP	Q8IY22	773 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SYS1	Q8N2H4	156 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	EXD3	Q8N9H8	876 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SLC25A38	Q96DW6	304 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SEMA4C	Q9C0C4	833 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	IGKV3D-11	A0A0A0MRZ8	115 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	TCRBV16S1A1N1	A0A5B0	115 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286		A8MXK9	166 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF879	B4DU55	563 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	UPK3A	O75631	287 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	WDPCP	O95876	746 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	ALDOB	P05062	364 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	ABCD3	P28288	659 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SDHA	P31040	664 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	HNRNPK	P61978	463 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	HSD11B2	P80365	405 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	RIPPLY1	Q0D2K3	151 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	PYHIN1	Q6K0P9	492 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	DUSP19	Q8WTR2	217 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	PHF7	Q9BWX1	381 aa	Predicted RBP	13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SAV1	Q9H4B6	383 aa	Predicted RBP	13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SCPEP1	Q9HB40	452 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	SLC2A4RG	Q9NR83	387 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	TAS2R5	Q9NYW4	299 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	COPZ2	Q9P299	210 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	NPTN	Q9Y639	398 aa		13.35	□□□□□ -0.27
DDX55-209	ENST00000542286	FITM1	A5D6W6	292 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF593	O00488	134 aa	Predicted RBP	13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	TIAF1	O95411	115 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	FBL	P22087	321 aa	Known RBP	13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	CXCR1	P25024	350 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	HLA-DQA1	Q5Y7H0	255 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	COQ8A	Q8NI60	647 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	SLC46A1	Q96NT5	459 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	TBL1XR1	Q9BZK7	514 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	SLC6A15	Q9H2J7	730 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF304	Q9HCX3	659 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	LAMP5	Q9UJQ1	280 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF281	Q9Y2X9	895 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	CEP192	Q8TEP8	1941 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	ARL6IP5	O75915	188 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	LPL	P06858	475 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	NMB	P08949	121 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	RAB3A	P20336	220 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF684	Q5T5D7	378 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	FAM198B	Q6UWH4	519 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	C17orf82	Q86X59	251 aa	Predicted RBP	13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	SLITRK4	Q8IW52	837 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	OR52I2	Q8NH67	350 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	C1orf216	Q8TAB5	229 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	KCTD12	Q96CX2	325 aa	Known RBP	13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	SLC22A13	Q9Y226	551 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	RCE1	Q9Y256	329 aa		13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	PCDHGA9	Q9Y5G4	932 aa	Known RBP	13.34	□□□□□ -0.27
DDX55-209	ENST00000542286	TRAV1-2	A0A0B4J238	106 aa		13.33	□□□□□ -0.27
DDX55-209	ENST00000542286	CXCL2	P19875	107 aa		13.33	□□□□□ -0.27
DDX55-209	ENST00000542286	ZNF169	Q14929	603 aa	Predicted RBP	13.33	□□□□□ -0.27
DDX55-209	ENST00000542286	TRAM1	Q15629	374 aa		13.33	□□□□□ -0.27
DDX55-209	ENST00000542286	C17orf107	Q6ZR85	190 aa		13.33	□□□□□ -0.27
DDX55-209	ENST00000542286	BTN2A1	Q7KYR7	527 aa		13.33	□□□□□ -0.27
DDX55-209	ENST00000542286	ELMOD3	Q96FG2	381 aa		13.33	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms