RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 ZNF426Q9BUY5 554 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 CDH20Q9HBT6 801 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 MEPEQ9NQ76 525 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 TRIM33Q9UPN9 1127 aa13.14□□□□□ -0.31
CLSTN3-213ENST00000541953 TGP01266 2768 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 IGHV1-69-2A0A0G2JMI3 117 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 PRORSD1PA6NEY8 169 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 ZSCAN5BA6NJL1 495 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC2A10O95528 541 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 SNAP29O95721 258 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 ASAH2BP0C7U1 165 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC18A1P54219 525 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 UCP2P55851 309 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 MTPNP58546 118 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 STX1BP61266 288 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 HIST3H3Q16695 136 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 REP15Q6BDI9 236 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 ACSM5Q6NUN0 579 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 TMEM154Q6P9G4 183 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 LRRC18Q8N456 261 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 SYT14Q8NB59 555 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 ZNF519Q8TB69 540 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 IPCEF1Q8WWN9 437 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 TAMM41Q96BW9 452 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 ZNF607Q96SK3 696 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 RNF121Q9H920 327 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC13A4Q9UKG4 626 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 FBXL3Q9UKT7 428 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC7A7Q9UM01 511 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 UGT2A1Q9Y4X1 527 aa13.13□□□□□ -0.31
CLSTN3-213ENST00000541953 TRIM77I1YAP6 450 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 M0QX08 132 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 POLR3GO15318 223 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 MGRN1O60291 552 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 FMO6PO60774 539 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 ERLIN1O75477 346 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 OR6A2O95222 327 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 IGHV1-46P01743 117 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 F13BP05160 661 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 CDAP32320 146 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 LSP1P33241 339 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 FMODQ06828 376 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 AGKQ53H12 422 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 RUNDC3AQ59EK9 446 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 RFPL4BQ6ZWI9 263 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 SLC16A14Q7RTX9 510 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 RETREG3Q86VR2 466 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 SNX32Q86XE0 403 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 NOXO1Q8NFA2 376 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 BHLHE22Q8NFJ8 381 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 OR1J1Q8NGS3 322 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 PFN4Q8NHR9 129 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 ASB10Q8WXI3 467 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 TAF15Q92804 592 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 NABP1Q96AH0 204 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 SEPHS2Q99611 448 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 MRPL13Q9BYD1 178 aaKnown RBP13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 TMBIM4Q9HC24 238 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 NANSQ9NR45 359 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 NKIRAS2Q9NYR9 191 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 NKIRAS1Q9NYS0 192 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 ANGPT4Q9Y264 503 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 PCDHGB1Q9Y5G3 927 aa13.12□□□□□ -0.31
CLSTN3-213ENST00000541953 LOC100509620A0A075B734 347 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 A0A0G2JMP0 313 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 A0A0X1KG70 313 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 CLDN25C9JDP6 229 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 SPRY3O43610 288 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 SERPINB7O75635 380 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 IGHV3-13P01766 116 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 TNFRSF1BP20333 461 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 PPIBP23284 216 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 ZFP36P26651 326 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 MMP15P51511 669 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 UGT2B15P54855 530 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 UBA52P62987 128 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 LCN2P80188 198 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 RPL18Q07020 188 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 TBC1D28Q2M2D7 210 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 PABPC1L2AQ5JQF8 200 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 DCAF12L2Q5VW00 463 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 TMEM53Q6P2H8 277 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 CLDN22Q8N7P3 220 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 RBM15BQ8NDT2 890 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 OR4M2Q8NGB6 313 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 MOSPD2Q8NHP6 518 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 SNX33Q8WV41 574 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 GEMIN6Q8WXD5 167 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 DVL3Q92997 716 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 NMD3Q96D46 503 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 DUX5Q96PT3 197 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 RBM4Q9BWF3 364 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 SAP30LQ9HAJ7 183 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 C20orf141Q9NUB4 165 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 ZNF229Q9UJW7 825 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 PPIAL4AQ9Y536 164 aa13.11□□□□□ -0.31
CLSTN3-213ENST00000541953 BLOC1S5-TXNDC5H3BN57 136 aa13.1□□□□□ -0.31
CLSTN3-213ENST00000541953 TRMUO75648 421 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-213ENST00000541953 UBOX5O94941 541 aa13.1□□□□□ -0.31
CLSTN3-213ENST00000541953 PRSS23O95084 383 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms