RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 LTBQ06643 244 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 IL10RAQ13651 578 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 CSRP2Q16527 193 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 C2orf68Q2NKX9 166 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 PCGF3Q3KNV8 242 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 COL13A1Q5TAT6 717 aaPredicted RBP11.33□□□□□ -0.6
RNF4-222ENST00000541204 OGFOD3Q6PK18 319 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 SLC16A9Q7RTY1 509 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 LRRTM1Q86UE6 522 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 LSM14AQ8ND56 463 aaKnown RBP11.33□□□□□ -0.6
RNF4-222ENST00000541204 OR51A4Q8NGJ6 313 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 OR5M1Q8NGP8 315 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 OR10AC1Q8NH08 325 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 ZNF563Q8TA94 476 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 LINC00052Q96N35 136 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 OR2A7Q96R45 310 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 UBQLN4Q9NRR5 601 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 IKZF2Q9UKS7 526 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 MKL2Q9ULH7 1088 aa11.33□□□□□ -0.6
RNF4-222ENST00000541204 ATXN7L1Q9ULK2 861 aaPredicted RBP11.33□□□□□ -0.6
RNF4-222ENST00000541204 ANXA2P2A6NMY6 339 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ARPC5O15511 151 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 SUSD5O60279 629 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ICOSLGO75144 302 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 GLSO94925 669 aaPredicted RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 NUDT14O95848 222 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ANXA2P07355 339 aaKnown RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 IFI6P09912 130 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ADH7P40394 386 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 GRK6P43250 576 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 AFF3P51826 1226 aaKnown RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 NR0B1P51843 470 aaKnown RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 MAP2K6P52564 334 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 PSMD4P55036 377 aaKnown RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 CTXN1P60606 82 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 TAGLNQ01995 201 aaKnown RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 ARHGAP40Q5TG30 622 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ALKAL2Q6UX46 152 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 PRSS42Q7Z5A4 293 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 GLB1L2Q8IW92 636 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 OR4D10Q8NGI6 311 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 NSMAFQ92636 917 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 GINS4Q9BRT9 223 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 MRI1Q9BV20 369 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 NUDT9Q9BW91 350 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 REG4Q9BYZ8 158 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ULBP3Q9BZM4 244 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 SDHAF2Q9NX18 166 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 FITM1A5D6W6 292 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 SNRPGP15A8MWD9 76 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 CDK2AP1O14519 115 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 DUX1O43812 170 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 WISP1O95388 367 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 IL5P05113 134 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 RORAP35398 523 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 H2BFSP57053 126 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 C16orf47Q6ZP98 133 aaPredicted RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 LANCL3Q6ZV70 420 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 Q7L0L9 218 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 FAM122BQ7Z309 247 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 COQ8AQ8NI60 647 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 CCDC74AQ96AQ1 378 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 UTP23Q9BRU9 249 aaKnown RBP11.32□□□□□ -0.6
RNF4-222ENST00000541204 CTSFQ9UBX1 484 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 EPHA6Q9UF33 1036 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 ETV7Q9Y603 341 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 KCNMB2Q9Y691 235 aa11.32□□□□□ -0.6
RNF4-222ENST00000541204 BLACEA4D250 179 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 MEIS3P1A6NDR6 274 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 HCRTR2O43614 444 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 RBBP9O75884 186 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 LDOC1O95751 146 aaPredicted RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 ABHD16AO95870 558 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 GPANK1O95872 356 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 FBLP22087 321 aaKnown RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 MST1P26927 711 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 MAPK3P27361 379 aaPredicted RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.31□□□□□ -0.6
RNF4-222ENST00000541204 ISXQ2M1V0 245 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 ALG10Q5BKT4 473 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 YOD1Q5VVQ6 348 aaPredicted RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 OTPQ5XKR4 325 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 MARCH3Q86UD3 253 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 BPHLQ86WA6 291 aaPredicted RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 PLXDC1Q8IUK5 500 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 EXD3Q8N9H8 876 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 OR4C16Q8NGL9 310 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 TMEM106AQ96A25 262 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 GPX7Q96SL4 187 aaPredicted RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 ZNF304Q9HCX3 659 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 LAMP5Q9UJQ1 280 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 TRBV5-5A0A0J9YX44 114 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 CPED1A4D0V7 1026 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 H3BMH7 237 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 TEX46H3BTG2 121 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 SOX1O00570 391 aaPredicted RBP11.31□□□□□ -0.6
RNF4-222ENST00000541204 TSPAN4O14817 238 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 DDAH2O95865 285 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 RLN1P04808 185 aa11.31□□□□□ -0.6
RNF4-222ENST00000541204 HOXD4P09016 255 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms