RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 MRPS18AQ9NVS2 196 aaKnown RBP9.3□□□□□ -0.92
VPS33A-204ENST00000540669 FKBP14Q9NWM8 211 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 PARPBPQ9NWS1 579 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 HAO2Q9NYQ3 351 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 UBAP1Q9NZ09 502 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 GLTPQ9NZD2 209 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 GPR52Q9Y2T5 361 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 NOSIPQ9Y314 301 aaKnown RBP9.3□□□□□ -0.92
VPS33A-204ENST00000540669 EMC9Q9Y3B6 208 aa9.3□□□□□ -0.92
VPS33A-204ENST00000540669 SPTAN1Q13813 2472 aaKnown RBP9.3□□□□□ -0.92
VPS33A-204ENST00000540669 SPTBN1Q01082 2364 aaKnown RBP9.3□□□□□ -0.92
VPS33A-204ENST00000540669 FAM183AA6NL82 134 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 HSPB2A8KAH6 182 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 J3QRE1 110 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 MSTNO14793 375 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 SLC43A1O75387 559 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 SERPINI2O75830 405 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 HRGP04196 525 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 ITGA5P08648 1049 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CCKARP32238 428 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CSNK1A1P48729 337 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CXCR4P61073 352 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 DBPQ10586 325 aaPredicted RBP9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CAMK2DQ13557 499 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 HSPB2Q16082 182 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 SNAPC1Q16533 368 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 SLC35D3Q5M8T2 416 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 THEM4Q5T1C6 240 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 MEDAGQ5VYS4 303 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 FBXW9Q5XUX1 488 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 Q6ZT83 130 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CXXC5Q7LFL8 322 aaKnown RBP9.29□□□□□ -0.92
VPS33A-204ENST00000540669 P4HA3Q7Z4N8 544 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 THAP5Q7Z6K1 395 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CPOQ8IVL8 374 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 C8orf59Q8N0T1 100 aaPredicted RBP9.29□□□□□ -0.92
VPS33A-204ENST00000540669 POMGNT2Q8NAT1 580 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 SLC26A10Q8NG04 563 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 MCHR2Q969V1 340 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 APH1AQ96BI3 265 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 ZNF837Q96EG3 531 aaPredicted RBP9.29□□□□□ -0.92
VPS33A-204ENST00000540669 CCDC120Q96HB5 630 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 ZNF582Q96NG8 517 aaPredicted RBP9.29□□□□□ -0.92
VPS33A-204ENST00000540669 TSSK2Q96PF2 358 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 ALKBH3Q96Q83 286 aaPredicted RBP9.29□□□□□ -0.92
VPS33A-204ENST00000540669 PRRG4Q9BZD6 226 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 NUAK2Q9H093 628 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 TVP23BQ9NYZ1 205 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 SH3BGRL2Q9UJC5 107 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 B9D1Q9UPM9 204 aa9.29□□□□□ -0.92
VPS33A-204ENST00000540669 HRNRQ86YZ3 2850 aaPredicted RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 HCFC1P51610 2035 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 SH3D21A4FU49 640 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 CCL21O00585 134 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 XKRYO14609 159 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 ARHGEF9O43307 516 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 MRPL33O75394 65 aaKnown RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 IL2RAP01589 272 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 CLUP10909 449 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 PSKH1P11801 424 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 HTR1FP30939 366 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 FOXG1P55316 489 aaPredicted RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 SH3BGRP55822 239 aaPredicted RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 MRPS34P82930 218 aaKnown RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 ZNF91Q05481 1191 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 CDK5R2Q13319 367 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 TMEM211Q6ICI0 200 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 PLBD1Q6P4A8 553 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 ZNF474Q6S9Z5 364 aaPredicted RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 BCDIN3DQ7Z5W3 292 aaKnown RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 MRGPRGQ86SM5 289 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 FJX1Q86VR8 437 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 LIX1LQ8IVB5 337 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 GID4Q8IVV7 300 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 MCEMP1Q8IX19 187 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 TIGD4Q8IY51 512 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 C1orf162Q8NEQ5 155 aaPredicted RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 OR9Q1Q8NGQ5 310 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 OR2T4Q8NH00 348 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 CNIH3Q8TBE1 160 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 IL4I1Q96RQ9 567 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 ZNF649Q9BS31 505 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 JAM3Q9BX67 310 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 PIGMQ9H3S5 423 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 MED20Q9H944 212 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 GPR35Q9HC97 309 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 RPRD1BQ9NQG5 326 aaKnown RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 MRPL22Q9NWU5 206 aaKnown RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 ASB6Q9NWX5 421 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 IMPAD1Q9NX62 359 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 COQ3Q9NZJ6 369 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 ZNF224Q9NZL3 707 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 PRSS50Q9UI38 385 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 LRCH1Q9Y2L9 728 aa9.28□□□□□ -0.92
VPS33A-204ENST00000540669 USP9YO00507 2555 aaPredicted RBP9.28□□□□□ -0.92
VPS33A-204ENST00000540669 WIPF3A6NGB9 483 aa9.27□□□□□ -0.93
VPS33A-204ENST00000540669 ZNF726A6NNF4 738 aa9.27□□□□□ -0.93
VPS33A-204ENST00000540669 A8MXE2 369 aa9.27□□□□□ -0.93
VPS33A-204ENST00000540669 PRR23D1E9PI22 279 aaPredicted RBP9.27□□□□□ -0.93
VPS33A-204ENST00000540669 LRRTM2O43300 516 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms