RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CRABP1P29762 137 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 CYCSP99999 105 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 ZNF169Q14929 603 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 MANEAQ5SRI9 462 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 STEAP1BQ6NZ63 245 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 TSEN54Q7Z6J9 526 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SPEM1Q8N4L4 309 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 FLVCR1-AS1Q8TAF5 88 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 FOXRED1Q96CU9 486 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 ZNF681Q96N22 645 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 DERL3Q96Q80 235 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 PELOQ9BRX2 385 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 AUNIPQ9H7T9 357 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 BIN3Q9NQY0 253 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 TMEM229AB2RXF0 380 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 UBBP0CG47 229 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 UBCP0CG48 685 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 NR2C1P13056 603 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 LUMP51884 338 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 BTG1P62324 171 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 DYRK1AQ13627 763 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SERTAD2Q14140 314 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SLC25A35Q3KQZ1 300 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 GLYATL3Q5SZD4 288 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 NKAIN2Q5VXU1 208 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 ZNF704Q6ZNC4 412 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 C17orf107Q6ZR85 190 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 RHOUQ7L0Q8 258 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 ZNF775Q96BV0 537 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 MAP6Q96JE9 813 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 RNF170Q96K19 258 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 PRRT1Q99946 306 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 UBE2J1Q9Y385 318 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 C9J4A7 227 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 RAF1P04049 648 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SERPINA5P05154 406 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 PPP3CBP16298 524 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 HIST1H1CP16403 213 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 TNK1Q13470 666 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 EXOSC2Q13868 293 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 WBP2NLQ6ICG8 309 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 LINC00346Q8IVM7 164 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 RELL2Q8NC24 303 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 OR4C15Q8NGM1 316 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 BCL2L10Q9HD36 194 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 NCDNQ9UBB6 729 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 KLK11Q9UBX7 282 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 CGGBP1Q9UFW8 167 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 PLXND1Q9Y4D7 1925 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 PRAMEF27A3QJZ7 478 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 KRBOX1C9JBD0 128 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 ZNF264O43296 627 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 OR2T1O43869 369 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 LALBAP00709 142 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SNRNP70P08621 437 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 TPT1P13693 172 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 NID1P14543 1247 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 CRYBB2P43320 205 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 CAPZBP47756 277 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 RAB38P57729 211 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 ZP2Q05996 745 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 CA13Q8N1Q1 262 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 CADM4Q8NFZ8 388 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 TCTN2Q96GX1 697 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 DCLRE1CQ96SD1 692 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 LPAR4Q99677 370 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 LMF2Q9BU23 707 aaKnown RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 TSPAN10Q9H1Z9 355 aaPredicted RBP9.12□□□□□ -0.95
TRAF1-202ENST00000540010 LRIT1Q9P2V4 623 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SIT1Q9Y3P8 196 aa9.12□□□□□ -0.95
TRAF1-202ENST00000540010 SNRNP200O75643 2136 aaKnown RBP9.11□□□□□ -0.95
TRAF1-202ENST00000540010 CIB4A0PJX0 185 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 BCAT2O15382 392 aaPredicted RBP9.11□□□□□ -0.95
TRAF1-202ENST00000540010 GFERP55789 205 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 CLDN6P56747 220 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 BCL2A1Q16548 175 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 GPR157Q5UAW9 335 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 MEX3BQ6ZN04 569 aaKnown RBP9.11□□□□□ -0.95
TRAF1-202ENST00000540010 OR5T1Q8NG75 326 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 OR1J4Q8NGS1 313 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 OR10R2Q8NGX6 335 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 OR5B2Q96R09 309 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 REV1Q9UBZ9 1251 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 SERINC4A6NH21 518 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 TXNL1O43396 289 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 RAD52P43351 418 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 SNRPNP63162 240 aaKnown RBP9.11□□□□□ -0.95
TRAF1-202ENST00000540010 TMEM244Q5VVB8 128 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 NIPAL3Q6P499 406 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 SLC38A1Q9H2H9 487 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 PLEKHJ1Q9NW61 149 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 FTSJ1Q9UET6 329 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 ING1Q9UK53 422 aaPredicted RBP9.11□□□□□ -0.95
TRAF1-202ENST00000540010 DKKL1Q9UK85 242 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 A4GNTQ9UNA3 340 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 EMC9Q9Y3B6 208 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 MDC1Q14676 2089 aaKnown RBP9.11□□□□□ -0.95
TRAF1-202ENST00000540010 OR2W5A6NFC9 320 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 LGALS8O00214 317 aa9.11□□□□□ -0.95
TRAF1-202ENST00000540010 FFAR1O14842 300 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 220.3 ms