RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 IL2RAP01589 272 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 RPN2P04844 631 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 LYL1P12980 280 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 CD22P20273 847 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 HOXA11P31270 313 aaPredicted RBP11.33□□□□□ -0.6
USP3-203ENST00000538686 PRSS3P35030 304 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 SNCAP37840 140 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 GATMP50440 423 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 RAP1BP61224 184 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 RPS11P62280 158 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP3-203ENST00000538686 LSM11P83369 360 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP3-203ENST00000538686 BEX3Q00994 111 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 GUK1Q16774 197 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 ODF4Q2M2E3 257 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 RPTNQ6XPR3 784 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 PPP1R3BQ86XI6 285 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 OR52L1Q8NGH7 329 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 FIBINQ8TAL6 211 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 SHDQ96IW2 340 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 GAL3ST4Q96RP7 486 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 C20orf24Q9BUV8 137 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 TMEM121BQ9BXQ6 578 aaPredicted RBP11.33□□□□□ -0.6
USP3-203ENST00000538686 SLC35B3Q9H1N7 401 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 NOX4Q9NPH5 578 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 DNAJB11Q9UBS4 358 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 IL17BQ9UHF5 180 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 PRSS21Q9Y6M0 314 aa11.33□□□□□ -0.6
USP3-203ENST00000538686 TRBV5-4A0A0C4DH59 114 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 KDELR3O43731 214 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SOX15O60248 233 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ETHE1O95571 254 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CD3DP04234 171 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 PTHLHP12272 177 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 TBX4P57082 545 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 PFN3P60673 137 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SIRPAP78324 504 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 GAS6Q14393 721 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 RAB35Q15286 201 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 MAJINQ3KP22 176 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ARSJQ5FYB0 599 aaPredicted RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 ULK3Q6PHR2 472 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CLEC2AQ6UVW9 174 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SMIM15Q7Z3B0 74 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SLC25A42Q86VD7 318 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 DND1Q8IYX4 353 aaKnown RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 GABRG1Q8N1C3 465 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ZNF433Q8N7K0 673 aaPredicted RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 LMNTD1Q8N9Z9 388 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CXorf40AQ8TE69 158 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 C16orf78Q8WTQ4 265 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ASB11Q8WXH4 323 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 DTD2Q96FN9 168 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SERINC2Q96SA4 455 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 GFI1Q99684 422 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 WFDC6Q9BQY6 131 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 BOCQ9BWV1 1114 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 C1QTNF2Q9BXJ5 285 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SLCO5A1Q9H2Y9 848 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ASB8Q9H765 288 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CXorf36Q9H7Y0 433 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 TAF9BQ9HBM6 251 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SLC23A2Q9UGH3 650 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SLCO1B1Q9Y6L6 691 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 PLXNA4Q9HCM2 1894 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 FAM171A2A8MVW0 826 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CCSO14618 274 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 KLF4O43474 513 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ZNF821O75541 412 aaPredicted RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 SLC2A10O95528 541 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 SLC35G4P0C7Q5 338 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ZBTB25P24278 435 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 IDH3GP51553 393 aaPredicted RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 LTBQ06643 244 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 KCNMB1Q16558 191 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ZXDCQ2QGD7 858 aaPredicted RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 PDZD11Q5EBL8 140 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 GFI1BQ5VTD9 330 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ANKRD16Q6P6B7 361 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 DLK2Q6UY11 383 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 Q6ZRG5 221 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 TTLL10Q6ZVT0 673 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 LRRTM4Q86VH4 590 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 TRAPPC5Q8IUR0 188 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CD300LFQ8TDQ1 290 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 NEIL2Q969S2 332 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 RSPO3Q9BXY4 272 aaPredicted RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 PCED1AQ9H1Q7 454 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 ADGRL4Q9HBW9 690 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 BCL2L10Q9HD36 194 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CACNG4Q9UBN1 327 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 OR52A1Q9UKL2 312 aa11.32□□□□□ -0.6
USP3-203ENST00000538686 CDV3Q9UKY7 258 aaKnown RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 YBX2Q9Y2T7 364 aaKnown RBP11.32□□□□□ -0.6
USP3-203ENST00000538686 RLFQ13129 1914 aa11.31□□□□□ -0.6
USP3-203ENST00000538686 TRBV2A0A0J9YWF9 115 aa11.31□□□□□ -0.6
USP3-203ENST00000538686 HMGN4O00479 90 aa11.31□□□□□ -0.6
USP3-203ENST00000538686 DIRAS3O95661 229 aa11.31□□□□□ -0.6
USP3-203ENST00000538686 F13BP05160 661 aa11.31□□□□□ -0.6
USP3-203ENST00000538686 QDPRP09417 244 aa11.31□□□□□ -0.6
USP3-203ENST00000538686 PET100P0DJ07 73 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms