RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 TOP3AQ13472 1001 aaPredicted RBP11.27□□□□□ -0.61
VPS28-216ENST00000533806 FAM98BQ52LJ0 330 aaKnown RBP11.27□□□□□ -0.61
VPS28-216ENST00000533806 MESTQ5EB52 335 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 THEM4Q5T1C6 240 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 C11orf71Q6IPW1 123 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 PGBD2Q6P3X8 592 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 FOXL2NBQ6ZUU3 175 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 CANT1Q8WVQ1 401 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 NABP1Q96AH0 204 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 Q96M85 177 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 TRAF4Q9BUZ4 470 aaPredicted RBP11.27□□□□□ -0.61
VPS28-216ENST00000533806 SLC7A8Q9UHI5 535 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 F8P00451 2351 aa11.27□□□□□ -0.61
VPS28-216ENST00000533806 TCRBV3S1A0A5B6 114 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 SLC22A23A1A5C7 686 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 TNFRSF11BO00300 401 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 MGRN1O60291 552 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 OR10H3O60404 316 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 SMPD2O60906 423 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 OR8G3PP0DMU2 310 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 APEHP13798 732 aaKnown RBP11.26□□□□□ -0.61
VPS28-216ENST00000533806 TTKP33981 857 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 RAB1AP62820 205 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 ADAM8P78325 824 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 HGFACQ04756 655 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 TSPAN31Q12999 210 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 GSG1Q2KHT4 349 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 RFX4Q33E94 735 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 OR2T5Q6IEZ7 315 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 ZNF544Q6NX49 715 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 SMARCD3Q6STE5 483 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 DPY19L2P2Q6ZN68 376 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 ZNF584Q8IVC4 421 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 PAPD5Q8NDF8 572 aaKnown RBP11.26□□□□□ -0.61
VPS28-216ENST00000533806 OR2T29Q8NH02 315 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 FNDC8Q8TC99 324 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 HTRA1Q92743 480 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 SH3GL3Q99963 347 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 DHRS9Q9BPW9 319 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 CHID1Q9BWS9 393 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 SIAEQ9HAT2 523 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 KRCC1Q9NPI7 259 aaPredicted RBP11.26□□□□□ -0.61
VPS28-216ENST00000533806 IL20RAQ9UHF4 553 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 TMCC3Q9ULS5 477 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 AURKCQ9UQB9 309 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 LAMP3Q9UQV4 416 aa11.26□□□□□ -0.61
VPS28-216ENST00000533806 FLNAP21333 2647 aaKnown RBP11.25□□□□□ -0.61
VPS28-216ENST00000533806 IGHV2OR16-5A0A0B4J2B6 119 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 DHRS12A0PJE2 317 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 ARPC3O15145 178 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 ATP5HO75947 161 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 UBL3O95164 117 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 GASTP01350 101 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 CRYAAP02489 173 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 MMP7P09237 267 aaPredicted RBP11.25□□□□□ -0.61
VPS28-216ENST00000533806 PATE4P0C8F1 98 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 CD79AP11912 226 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 NR2C1P13056 603 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 ZNF35P13682 527 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 HOXB6P17509 224 aaKnown RBP11.25□□□□□ -0.61
VPS28-216ENST00000533806 SDHAP31040 664 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 CDAP32320 146 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 RPL4P36578 427 aaKnown RBP11.25□□□□□ -0.61
VPS28-216ENST00000533806 IFNGR2P38484 337 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 GIPRP48546 466 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 PTH2RP49190 550 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 ZNF84P51523 738 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 IDH3GP51553 393 aaPredicted RBP11.25□□□□□ -0.61
VPS28-216ENST00000533806 PIGFQ07326 219 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 MST1LQ2TV78 715 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 FAM27BQ5VT28 67 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 GPR139Q6DWJ6 353 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 PRSS57Q6UWY2 283 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 DEPDC4Q8N2C3 294 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 LINC00471Q8N535 108 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 IL17RDQ8NFM7 739 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 GNPDA2Q8TDQ7 276 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 TMEM171Q8WVE6 324 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 SLCO4A1Q96BD0 722 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 MS4A3Q96HJ5 214 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 LRGUKQ96M69 825 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 RBP7Q96R05 134 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 VSX1Q9NZR4 365 aaPredicted RBP11.25□□□□□ -0.61
VPS28-216ENST00000533806 GRHPRQ9UBQ7 328 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 MTORP42345 2549 aa11.25□□□□□ -0.61
VPS28-216ENST00000533806 TEX13CA0A0J9YWL9 993 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 PRSS37A4D1T9 235 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 IMPA2O14732 288 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 ARHGEF9O43307 516 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 ENTPD5O75356 428 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 SERPINA5P05154 406 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 SCG5P05408 212 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 NPR2P20594 1047 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 APOBEC3AP31941 199 aaPredicted RBP11.24□□□□□ -0.61
VPS28-216ENST00000533806 CDKN2AP42771 156 aaKnown RBP11.24□□□□□ -0.61
VPS28-216ENST00000533806 CAPZA2P47755 286 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 RASSF2P50749 326 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 NKX6-1P78426 367 aaPredicted RBP11.24□□□□□ -0.61
VPS28-216ENST00000533806 CD47Q08722 323 aa11.24□□□□□ -0.61
VPS28-216ENST00000533806 PPP1R8Q12972 351 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms