RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 NRN1LQ496H8 165 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 PAPD5Q8NDF8 572 aaKnown RBP17.28■□□□□ 0.36
CPSF1-209ENST00000532725 OR9Q2Q8NGE9 314 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 FGFBP3Q8TAT2 258 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 FNDC8Q8TC99 324 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 FBXW5Q969U6 566 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 NDEL1Q9GZM8 345 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 CXXC4Q9H2H0 198 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 REEP1Q9H902 201 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 NOX3Q9HBY0 568 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 SAMHD1Q9Y3Z3 626 aaKnown RBP17.28■□□□□ 0.36
CPSF1-209ENST00000532725 UGT2A1Q9Y4X1 527 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 IER3IP1Q9Y5U9 82 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 U3KQV3 271 aa17.28■□□□□ 0.36
CPSF1-209ENST00000532725 E7EQL1 145 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 AHCYL1O43865 530 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 CCNB2O95067 398 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 TXNDC12O95881 172 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 CST1P01037 141 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 CELA3BP08861 270 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 CECR9P0C854 216 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 ZNF84P51523 738 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 CD47Q08722 323 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 MICAQ29983 383 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 PGGHGQ32M88 737 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 MESTQ5EB52 335 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 GPR139Q6DWJ6 353 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 ASRGL1Q7L266 308 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 DEPDC4Q8N2C3 294 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 SMAP2Q8WU79 429 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-209ENST00000532725 HTRA1Q92743 480 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 SLCO4A1Q96BD0 722 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 CCL19Q99731 98 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 SH3GL3Q99963 347 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 OR52D1Q9H346 318 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 DENND2DQ9H6A0 471 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-209ENST00000532725 SEC61A2Q9H9S3 476 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 BEX4Q9NWD9 120 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-209ENST00000532725 MOKQ9UQ07 419 aa17.27■□□□□ 0.36
CPSF1-209ENST00000532725 SLC22A23A1A5C7 686 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 MGRN1O60291 552 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 SOD3P08294 240 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 PATE4P0C8F1 98 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 CD79AP11912 226 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 NR2C1P13056 603 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 APEHP13798 732 aaKnown RBP17.26■□□□□ 0.35
CPSF1-209ENST00000532725 SDHAP31040 664 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 CDAP32320 146 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 CDH11P55287 796 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 RAB1AP62820 205 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 MRPS34P82930 218 aaKnown RBP17.26■□□□□ 0.35
CPSF1-209ENST00000532725 NAAAQ02083 359 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 GSG1Q2KHT4 349 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 B3GLCTQ6Y288 498 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 MYPOPQ86VE0 399 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-209ENST00000532725 NSMAFQ92636 917 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 RASD2Q96D21 266 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 ZNF570Q96NI8 536 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 SIAEQ9HAT2 523 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 ARID1AO14497 2285 aa17.26■□□□□ 0.35
CPSF1-209ENST00000532725 TEX13CA0A0J9YWL9 993 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 PRSS37A4D1T9 235 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 ATP6V1G2-DDX39BF2Z307 99 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 H7C1C5 153 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 XKRYO14609 159 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 FKBP6O75344 327 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 ENTPD5O75356 428 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 UBL3O95164 117 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 FARS2O95363 451 aaKnown RBP17.25■□□□□ 0.35
CPSF1-209ENST00000532725 CALCRP30988 508 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 GIPRP48546 466 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 ERFP50548 548 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 IDH3GP51553 393 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-209ENST00000532725 RPS6KA3P51812 740 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 LCN6P62502 163 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 GK3PQ14409 553 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 FANK1Q8TC84 345 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 NANOS1Q8WY41 292 aaKnown RBP17.25■□□□□ 0.35
CPSF1-209ENST00000532725 NABP1Q96AH0 204 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 SAMD8Q96LT4 415 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 DHRS9Q9BPW9 319 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 LAMP3Q9UQV4 416 aa17.25■□□□□ 0.35
CPSF1-209ENST00000532725 USF3Q68DE3 2245 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 IMPA2O14732 288 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 ARPC3O15145 178 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 TMCC2O75069 709 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 CD8AP01732 235 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 CRYAAP02489 173 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 ZNF14P17017 642 aaPredicted RBP17.24■□□□□ 0.35
CPSF1-209ENST00000532725 NPR2P20594 1047 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 SLC6A6P31641 620 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 CDKN2AP42771 156 aaKnown RBP17.24■□□□□ 0.35
CPSF1-209ENST00000532725 CBX1P83916 185 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 NPRL3Q12980 569 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 KRR1Q13601 381 aaKnown RBP17.24■□□□□ 0.35
CPSF1-209ENST00000532725 ETFDHQ16134 617 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 SPNS3Q6ZMD2 512 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 ZNF620Q6ZNG0 422 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 CCDC121Q6ZUS5 278 aa17.24■□□□□ 0.35
CPSF1-209ENST00000532725 FOXL2NBQ6ZUU3 175 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms