RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RAP2C	Q9Y3L5	183 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ARL5A	Q9Y689	179 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	A2ML1	A8K2U0	1454 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ASTN1	O14525	1302 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PLCH1	Q4KWH8	1693 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PTPRM	P28827	1452 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ECM29	Q5VYK3	1845 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110		A0A087X0T9	212 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110		A0A096LPK6	155 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110		A0A0A0MQY5	61 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TGIF2-C20orf24	A0A0A6YYL0	155 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TRAV39	A0A0B4J263	110 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ZCWPW2	A0A1B0GU75	182 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110		A0A1W2PQL4	384 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110		A4D1N5	150 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR2A25	A4D2G3	310 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A8P	A6NJQ4	464 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	MYO1G	B0I1T2	1018 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR11H12	B2RN74	326 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PEX12	O00623	359 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	AIRE	O43918	545 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	CDC40	O60508	579 aa	Known RBP eCLIP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	WDR1	O75083	606 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SH3BGRL	O75368	114 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	STBD1	O95210	358 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	NTN1	O95631	604 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	CH25H	O95992	272 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	IGF2	P01344	180 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	IGHG4	P01861	327 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	THY1	P04216	161 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	BPGM	P07738	259 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A13P	P0C7W8	464 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	FAM90A24P	P0C7X0	464 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SULT1A3	P0DMM9	295 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SULT1A4	P0DMN0	295 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	UCHL3	P15374	230 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	CCND3	P30281	292 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	HOXA13	P31271	388 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	AVPR1A	P37288	418 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR3A1	P47881	315 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	LINC00205	P59089	165 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	RPL23A	P62750	156 aa	Known RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SLC35A2	P78381	396 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	MS4A2	Q01362	244 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	MYL7	Q01449	175 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	DEFA5	Q01523	94 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SLC10A7	Q0GE19	358 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	BST1	Q10588	318 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	HNRNPA0	Q13151	305 aa	Known RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PTPRCAP	Q14761	206 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SLC9A3R2	Q15599	337 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR4D1	Q15615	310 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SMIM21	Q3B7S5	101 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	UNC50	Q53HI1	259 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	BEX5	Q5H9J7	111 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	FAM74A1	Q5RGS3	127 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PLEKHS1	Q5SXH7	462 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	DCST1	Q5T197	706 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM244	Q5VVB8	128 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	H3F3C	Q6NXT2	135 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	C8orf82	Q6P1X6	216 aa	Predicted RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	MFSD7	Q6UXD7	560 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TMPRSS11A	Q6ZMR5	421 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF836	Q6ZNA1	936 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	LANCL3	Q6ZV70	420 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	CYS1	Q717R9	158 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	LINGO2	Q7L985	606 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	YRDC	Q86U90	279 aa	Known RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	C9orf40	Q8IXQ3	194 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SELENOH	Q8IZQ5	122 aa	Known RBP	5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PELI3	Q8N2H9	469 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ZBTB2	Q8N680	514 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	SAMD12	Q8N8I0	201 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TEX45	Q8NA69	505 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	UBAC2	Q8NBM4	344 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PXT1	Q8NFP0	134 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	BEST4	Q8NFU0	473 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR11H1	Q8NG94	326 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR4F15	Q8NGB8	312 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR4F6	Q8NGB9	312 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR9Q1	Q8NGQ5	310 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR13C9	Q8NGT0	318 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR6K3	Q8NGY3	331 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR11H2	Q8NH07	326 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR5W2	Q8NH69	310 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR4S2	Q8NH73	311 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	NUBPL	Q8TB37	319 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	PIGX	Q8TBF5	258 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	CD99L2	Q8TCZ2	262 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	MAPK15	Q8TD08	544 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	WFIKKN2	Q8TEU8	576 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ASB5	Q8WWX0	329 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	RLN3	Q8WXF3	142 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM234	Q8WY98	164 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ERGIC1	Q969X5	290 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	TMEM159	Q96B96	161 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	NEDD4L	Q96PU5	975 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	OR5B2	Q96R09	309 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF382	Q96SR6	550 aa		5.03	□□□□□ -1.6
CD44-231	ENST00000531110	RTP3	Q9BQQ7	232 aa		5.03	□□□□□ -1.6

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