RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HIST3H2AQ7L7L0 130 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 SLC16A14Q7RTX9 510 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 NANOGNBQ7Z5D8 188 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 OR4K5Q8NGD3 323 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 OR51F2Q8NH61 342 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 VANGL1Q8TAA9 524 aaPredicted RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 ZNF519Q8TB69 540 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 TSPEARQ8WU66 669 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 HIST1H2ACQ93077 130 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 MCHR2Q969V1 340 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 TSPAN32Q96QS1 320 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 PRSS27Q9BQR3 290 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 MRPL13Q9BYD1 178 aaKnown RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 CDH20Q9HBT6 801 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 LPAR2Q9HBW0 351 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 MEPEQ9NQ76 525 aaPredicted RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 HINT3Q9NQE9 182 aaKnown RBP9.7□□□□□ -0.86
VPS28-214ENST00000531032 NKIRAS2Q9NYR9 191 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 TREM2Q9NZC2 230 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 TAAR3PQ9P1P4 343 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 GPR160Q9UJ42 338 aa9.7□□□□□ -0.86
VPS28-214ENST00000531032 TENM1Q9UKZ4 2725 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 TRAV20A0A0B4J274 112 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 CENPBD1B2RD01 187 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 PTHP01270 115 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 MMP7P09237 267 aaPredicted RBP9.69□□□□□ -0.86
VPS28-214ENST00000531032 UMPSP11172 480 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 GZMMP51124 257 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 ZNF133P52736 654 aaPredicted RBP9.69□□□□□ -0.86
VPS28-214ENST00000531032 UCP2P55851 309 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 CLRN1P58418 232 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 ERVS71-1P61550 626 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 CCL8P80075 99 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 RUNX1T1Q06455 604 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 SCGB2A2Q13296 93 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 TBC1D28Q2M2D7 210 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 PCGF3Q3KNV8 242 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 ALKBH6Q3KRA9 238 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 INTS11Q5TA45 600 aaKnown RBP9.69□□□□□ -0.86
VPS28-214ENST00000531032 CCDC80Q76M96 950 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 RBM15BQ8NDT2 890 aaKnown RBP9.69□□□□□ -0.86
VPS28-214ENST00000531032 NOXO1Q8NFA2 376 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 SYNPRQ8TBG9 265 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 SLC26A7Q8TE54 656 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 SNX33Q8WV41 574 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 RASSF5Q8WWW0 418 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 LRRC37BQ96QE4 947 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 ZNF347Q96SE7 839 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 BCL2L14Q9BZR8 327 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 OCEL1Q9H607 264 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 RNF121Q9H920 327 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 SLCO1C1Q9NYB5 712 aa9.69□□□□□ -0.86
VPS28-214ENST00000531032 IQCMA0A1B0GVH7 501 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 A0A1W2PRG6 482 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 BBIP1A8MTZ0 92 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 BLOC1S5-TXNDC5H3BN57 136 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 MRASO14807 208 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 MGRN1O60291 552 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 PNPP00491 289 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 IGF2P01344 180 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 MT-ND1P03886 318 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 F13BP05160 661 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 LCKP06239 509 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 RBM34P42696 430 aaKnown RBP9.68□□□□□ -0.86
VPS28-214ENST00000531032 CRYBB2P43320 205 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 RAD52P43351 418 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 ZNF84P51523 738 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 UGT2B15P54855 530 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 MYBPC1Q00872 1141 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 RPL18Q07020 188 aaKnown RBP9.68□□□□□ -0.86
VPS28-214ENST00000531032 CYLC2Q14093 348 aaPredicted RBP9.68□□□□□ -0.86
VPS28-214ENST00000531032 VMACQ2NL98 169 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 C10orf128Q5T292 105 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 TMEM154Q6P9G4 183 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 SHQ1Q6PI26 577 aaKnown RBP9.68□□□□□ -0.86
VPS28-214ENST00000531032 C1orf229Q6ZS94 237 aaPredicted RBP9.68□□□□□ -0.86
VPS28-214ENST00000531032 HDDC2Q7Z4H3 204 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 OR1J2Q8NGS2 313 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 OR10A6Q8NH74 314 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 ASB10Q8WXI3 467 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 C11orf40Q8WZ69 217 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 SH3GL1Q99961 368 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 LRMDAQ9H2I8 198 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 OR51B6Q9H340 312 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 ZNF665Q9H7R5 613 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 MED4Q9NPJ6 270 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 G6PC2Q9NQR9 355 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 CAPN7Q9Y6W3 813 aa9.68□□□□□ -0.86
VPS28-214ENST00000531032 IGHV1-69-2A0A0G2JMI3 117 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 NPIPB13A6NJU9 1138 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 NPIPB4C9JG80 1138 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 MCIDASD6RGH6 385 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 CDC14BO60729 498 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 DEAF1O75398 565 aaPredicted RBP9.67□□□□□ -0.86
VPS28-214ENST00000531032 TRMUO75648 421 aaKnown RBP9.67□□□□□ -0.86
VPS28-214ENST00000531032 OR7A10O76100 309 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 IGHV3-13P01766 116 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 TSPAN19P0C672 248 aa9.67□□□□□ -0.86
VPS28-214ENST00000531032 ANPEPP15144 967 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms