RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ING1Q9UK53 422 aaPredicted RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF346Q9UL40 294 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TMED7Q9Y3B3 224 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5K3A6NET4 321 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C1orf196B1AJZ1 125 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TNFRSF10CO14798 259 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 LILRB5O75023 590 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ZFPL1O95159 310 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 IL5P05113 134 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 HOXB5P09067 269 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 EEF1A1P68104 462 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 DUSP2Q05923 314 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C19orf57Q0VDD7 668 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TCEAL6Q6IPX3 200 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MAMSTRQ6ZN01 415 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 LRRC69Q6ZNQ3 347 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 VN1R4Q7Z5H5 301 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MARCH3Q86UD3 253 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5M1Q8NGP8 315 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 C16orf52Q8NHV5 167 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 SNIP1Q8TAD8 396 aaKnown RBP7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 MARC2Q969Z3 335 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 OR1F2PQ96R84 312 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 NRSN2Q9GZP1 204 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 ACKR4Q9NPB9 350 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 TAS2R4Q9NYW5 299 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 RHBDD3Q9Y3P4 386 aa7.68□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A0A6YYH2 397 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 A6NJ64 397 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 IDSB3KWA1 339 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 HNRNPKP61978 463 aaKnown RBP eCLIP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 BTG2P78543 158 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ARL6IP1Q15041 203 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 PRSS42Q7Z5A4 293 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF687Q8N1G0 1237 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 TOMM40LQ969M1 308 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 FGGYQ96C11 551 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 MICU1Q9BPX6 476 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 NUDT22Q9BRQ3 303 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 PTDSS2Q9BVG9 487 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC19A3Q9BZV2 496 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 OR52A1Q9UKL2 312 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 FOXJ3Q9UPW0 622 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 HIF3AQ9Y2N7 669 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SIRT4Q9Y6E7 314 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 A0A0G2JMZ2 1700 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 LRRC37A2A6NM11 1700 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC22A23A1A5C7 686 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 PRAMEF27A3QJZ7 478 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ERVH48-1M5A8F1 160 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 TP53I11O14683 189 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 XRCC3O43542 346 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 CTSVO60911 334 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ST6GAL1P15907 406 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 NAGAP17050 411 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SFTPDP35247 375 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RGS19P49795 217 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 PMPCAQ10713 525 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RHEBQ15382 184 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 FAM209AQ5JX71 171 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RHOUQ7L0Q8 258 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SGPP2Q8IWX5 399 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 CCNL2Q96S94 520 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 CDCA3Q99618 268 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC22A13Q9Y226 551 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF236Q9UL36 1845 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 F5H5K5 113 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 DVL2O14641 736 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 GMDSO60547 372 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 STK17BO94768 372 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 NDUFB6O95139 128 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SERPINA5P05154 406 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SELENOPP49908 381 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF84P51523 738 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 HSD17B7P56937 341 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RPL27P61353 136 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 GUCA2AQ02747 115 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 EMC4Q5J8M3 183 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 LPCAT3Q6P1A2 487 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 C17orf107Q6ZR85 190 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SFTPA1Q8IWL2 248 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 KDM8Q8N371 416 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SCMH1Q96GD3 660 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 OR5B2Q96R09 309 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 LPAR4Q99677 370 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SLC5A7Q9GZV3 580 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 SCPEP1Q9HB40 452 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 BIN3Q9NQY0 253 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 VSX1Q9NZR4 365 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 DKKL1Q9UK85 242 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RAB22AQ9UL26 194 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 COA3Q9Y2R0 106 aaPredicted RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 MYO16Q9Y6X6 1858 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 PLRG1O43660 514 aaKnown RBP7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 TMEM127O75204 238 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 RAD51DO75771 328 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 NKX2-2O95096 273 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 OR4E1P0C645 316 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 ZNF250P15622 560 aa7.67□□□□□ -1.18
LIMCH1-216ENST00000512820 EGR3Q06889 387 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms