RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 KATNBL1Q9H079 304 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TAS2R8Q9NYW2 309 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 GNG8Q9UK08 70 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SLC13A4Q9UKG4 626 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 MRPS33Q9Y291 106 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 XIRP1Q702N8 1843 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 NPIPB8E9PQR5 432 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 PIN1P1O15428 100 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 NME2P1O60361 137 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 RPLP1P05386 114 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 NDUFV2P19404 249 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 EDNRBP24530 442 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 SLC6A12P48065 614 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 EIF2B1Q14232 305 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF705AQ6ZN79 300 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 C17orf64Q86WR6 236 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ZSCAN4Q8NAM6 433 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 OR2L8Q8NGY9 312 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 SNX22Q96L94 193 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 DIRC2Q96SL1 478 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ELOVL1Q9BW60 279 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 PARD6GQ9BYG4 376 aaPredicted RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 TPSD1Q9BZJ3 242 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 SYT4Q9H2B2 425 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 MED17Q9NVC6 651 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 COLEC10Q9Y6Z7 277 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 QSER1Q2KHR3 1735 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 HMGN4O00479 90 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 IL33O95760 270 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ELFN1P0C7U0 828 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 HTR2CP28335 458 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 LTBQ06643 244 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 GUK1Q16774 197 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 RPL7L1Q6DKI1 246 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF620Q6ZNG0 422 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 AMER3Q8N944 861 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 PNLDC1Q8NA58 520 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ADAMTS17Q8TE56 1095 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 MIB2Q96AX9 1013 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 MRGPRX3Q96LB0 322 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 C5orf34Q96MH7 638 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 INTS14Q96SY0 518 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 GPR174Q9BXC1 333 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 HDGFL3Q9Y3E1 203 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 HS3ST3B1Q9Y662 390 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 PARP14Q460N5 1801 aa10.98□□□□□ -0.65
LIMCH1-213ENST00000511496 ELOA3CA0A087WX78 387 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 TGIF2-C20orf24A0A0A6YYL0 155 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF724A8MTY0 619 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 CTSLP07711 333 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 PGA3P0DJD8 388 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 OR3A1P47881 315 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 EIF5AP63241 154 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 IL13RA1P78552 427 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 TNFAIP1Q13829 316 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 COL9A2Q14055 689 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 JOSD1Q15040 202 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 TANGO2Q6ICL3 276 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 BTNL8Q6UX41 500 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 CD163Q86VB7 1156 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 NXPE1Q8N323 547 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 LMNTD1Q8N9Z9 388 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 TMEM104Q8NE00 496 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 SMPDL3AQ92484 453 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 SRMSQ9H3Y6 488 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 TAF9BQ9HBM6 251 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 ST6GALNAC2Q9UJ37 374 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 MED19A0JLT2 244 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 H3BRB1 525 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF821O75541 412 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 MAS1P04201 325 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 ITGB2P05107 769 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 NAA10P41227 235 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 RGS8P57771 180 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 ARF5P84085 180 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 NAAAQ02083 359 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 AMZ1Q400G9 498 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 DCAF10Q5QP82 559 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 MTSS1LQ765P7 747 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 Q8WTZ3 238 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF426Q9BUY5 554 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 H7BY64 318 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 CDC42EP2O14613 210 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 CTNSO60931 367 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 IL18BPO95998 194 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 S1PR1P21453 382 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 PRSS3P35030 304 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 RBX1P62877 108 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 SGCGQ13326 291 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 OR5I1Q13606 314 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 VITQ6UXI7 678 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 GABRG1Q8N1C3 465 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 BHLHE23Q8NDY6 225 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 M1APQ8TC57 530 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 FRZBQ92765 325 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 SMIM19Q96E16 107 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 POTEKPQ9BYX7 375 aa10.97□□□□□ -0.65
LIMCH1-213ENST00000511496 PRAMEF26H0Y7S4 382 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 GEMIN2O14893 280 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 RAMP1O60894 148 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms