RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 OR51A7Q8NH64 312 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 HDAC2Q92769 488 aaKnown RBP13.05□□□□□ -0.32
USP39-217ENST00000491659 ZNF75AQ96N20 296 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 SH3GL3Q99963 347 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 ALG12Q9BV10 488 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 KCNN2Q9H2S1 579 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 RNF121Q9H920 327 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 SMURF2Q9HAU4 748 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 MYOZ1Q9NP98 299 aaPredicted RBP13.05□□□□□ -0.32
USP39-217ENST00000491659 MAGEL2Q9UJ55 1249 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 TMEM5Q9Y2B1 443 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 CMAHPQ9Y471 501 aa13.05□□□□□ -0.32
USP39-217ENST00000491659 MGRN1O60291 552 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 SLC2A10O95528 541 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 SERPINA5P05154 406 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 H1F0P07305 194 aaKnown RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 ERCC1P07992 297 aaPredicted RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 PATE4P0C8F1 98 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 ZNF35P13682 527 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 HSD17B1P14061 328 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 TCN1P20061 433 aaPredicted RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 PCSK6P29122 969 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 GPR4P46093 362 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 ZNF133P52736 654 aaPredicted RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 MXRA7P84157 204 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 FMODQ06828 376 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 KRTAP21-3Q3LHN1 58 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 FGD3Q5JSP0 725 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 SAMD4BQ5PRF9 694 aaKnown RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 C16orf89Q6UX73 402 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 PIGWQ7Z7B1 504 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 IGFN1Q86VF2 1251 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 MEX3DQ86XN8 651 aaKnown RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 SVOPLQ8N434 492 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 FAM156AQ8NDB6 213 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 OR13C2Q8NGS9 318 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 FNDC8Q8TC99 324 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 KCNK17Q96T54 332 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 RAB1BQ9H0U4 201 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 C1orf198Q9H425 327 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 NMNAT1Q9HAN9 279 aaPredicted RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 DYNLRB1Q9NP97 96 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 KRCC1Q9NPI7 259 aaPredicted RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 DCAF13Q9NV06 445 aaKnown RBP13.04□□□□□ -0.32
USP39-217ENST00000491659 SLC7A8Q9UHI5 535 aa13.04□□□□□ -0.32
USP39-217ENST00000491659 ZFHX3Q15911 3703 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 A6NIZ1 184 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 LY6HO94772 140 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 PTHP01270 115 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 RHCEP18577 417 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 RPL4P36578 427 aaKnown RBP13.03□□□□□ -0.32
USP39-217ENST00000491659 PDLIM4P50479 330 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 RAP1BP61224 184 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 RAP1AP62834 184 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 MRPS34P82930 218 aaKnown RBP13.03□□□□□ -0.32
USP39-217ENST00000491659 PLP2Q04941 152 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 KRT72Q14CN4 511 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 TBPL2Q6SJ96 375 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 TMPRSS11FQ6ZWK6 438 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 ZNF584Q8IVC4 421 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 LRRC18Q8N456 261 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 ANKS4BQ8N8V4 417 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 LRRC75AQ8NAA5 344 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 SLC30A7Q8NEW0 376 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 FGFBP3Q8TAT2 258 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 C10orf105Q8TEF2 133 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 NSMAFQ92636 917 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 MRPL24Q96A35 216 aaKnown RBP13.03□□□□□ -0.32
USP39-217ENST00000491659 TSPAN32Q96QS1 320 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 RBP7Q96R05 134 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 TNFRSF13CQ96RJ3 184 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 PIMREGQ9BSJ6 248 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 GORASP2Q9H8Y8 452 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 CDH20Q9HBT6 801 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 CCNB1IP1Q9NPC3 277 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 ARL8BQ9NVJ2 186 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 ZNF346Q9UL40 294 aaKnown RBP13.03□□□□□ -0.32
USP39-217ENST00000491659 V9GYQ6 96 aa13.03□□□□□ -0.32
USP39-217ENST00000491659 NIPBLQ6KC79 2804 aaeCLIP13.02□□□□□ -0.33
USP39-217ENST00000491659 IQCMA0A1B0GVH7 501 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 A0A1W2PRQ8 180 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 INAFM1C9JVW0 142 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 NDUFS8O00217 210 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 GPRIN2O60269 458 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 ITGA2P17301 1181 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 GLRXP35754 106 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 HSF2Q03933 536 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 KRTAP1-1Q07627 177 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 DGCR6Q14129 220 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 CARTPTQ16568 116 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 FXNQ16595 210 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 TBC1D28Q2M2D7 210 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 ZBED5Q49AG3 693 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 THEM4Q5T1C6 240 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 TSEN54Q7Z6J9 526 aaKnown RBP13.02□□□□□ -0.33
USP39-217ENST00000491659 FAM86B1Q8N7N1 296 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 OR1J2Q8NGS2 313 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 ZNF519Q8TB69 540 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 SLC7A13Q8TCU3 470 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 MCUR1Q96AQ8 359 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms