RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 IGLV1-44P01699 117 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 OR8G3PP0DMU2 310 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 APEHP13798 732 aaKnown RBP14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ARR3P36575 388 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 LCN6P62502 163 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 GSG1Q2KHT4 349 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NRN1LQ496H8 165 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SLC22A25Q6T423 547 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 DEPDC4Q8N2C3 294 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ZNF611Q8N823 705 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 OR10G2Q8NGC3 310 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NSMAFQ92636 917 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SLCO4A1Q96BD0 722 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SAMD8Q96LT4 415 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CCL19Q99731 98 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 KCNS3Q9BQ31 491 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 B3GNT2Q9NY97 397 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ZNF224Q9NZL3 707 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 POU2F3Q9UKI9 436 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ITGB1BP2Q9UKP3 347 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PDZD2O15018 2839 aa14.18□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NOTCH2Q04721 2471 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SOCS2O14508 198 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 AHCYL1O43865 530 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PPP1R3DO95685 299 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 TXNDC12O95881 172 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CECR9P0C854 216 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 IDH3GP51553 393 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PIGFQ07326 219 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NPRL3Q12980 569 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 RPL13AP3Q6NVV1 102 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ADCK1Q86TW2 530 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SKA3Q8IX90 412 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 GIPC3Q8TF64 312 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 HTRA1Q92743 480 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 GTPBP3Q969Y2 492 aaKnown RBP14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 MBD6Q96DN6 1003 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ERMAPQ96PL5 475 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SH3GL3Q99963 347 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 DGCR6LQ9BY27 220 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 DENND2DQ9H6A0 471 aaPredicted RBP14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SEC61A2Q9H9S3 476 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NOX3Q9HBY0 568 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 UGT2A1Q9Y4X1 527 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CDH10Q9Y6N8 788 aa14.17□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ALPK2Q86TB3 2170 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CSMD2Q7Z408 3487 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ABCA4P78363 2273 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SLC22A23A1A5C7 686 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PRSS37A4D1T9 235 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ARRDC5A6NEK1 342 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ATP6V1G2-DDX39BF2Z307 99 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 IMPA2O14732 288 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 MGRN1O60291 552 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 E2F6O75461 281 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 RAB36O95755 333 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CELA3BP08861 270 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NPR2P20594 1047 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CDAP32320 146 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PTDSS1P48651 473 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 MRPS34P82930 218 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NAAAQ02083 359 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 DEFB113Q30KQ7 82 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 RASSF6Q6ZTQ3 369 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SLC16A14Q7RTX9 510 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 DPPA2Q7Z7J5 298 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 OR52L1Q8NGH7 329 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PIGTQ969N2 578 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 UTP4Q969X6 686 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 IFT27Q9BW83 186 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 EGLN3Q9H6Z9 239 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CISD1Q9NZ45 108 aaKnown RBP14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 DNAJB9Q9UBS3 223 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 MOKQ9UQ07 419 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ATP23Q9Y6H3 246 aa14.16□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ARPC3O15145 178 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 TIPRLO75663 272 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CRYAAP02489 173 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 GSTM3P21266 225 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NOS3P29474 1203 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ART1P52961 327 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 RAB1AP62820 205 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 CCNIQ14094 377 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SGCAQ16586 387 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SLC36A2Q495M3 483 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 TMEM53Q6P2H8 277 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 B3GLCTQ6Y288 498 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 PTCHD4Q6ZW05 846 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 TMEM179BQ7Z7N9 219 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 MYPOPQ86VE0 399 aaPredicted RBP14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 JAZF1Q86VZ6 243 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 LRRC18Q8N456 261 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 FGFBP3Q8TAT2 258 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SMAP2Q8WU79 429 aaPredicted RBP14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 NABP1Q96AH0 204 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 ZNF75AQ96N20 296 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 KCNN2Q9H2S1 579 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 SIAEQ9HAT2 523 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 TBC1D23Q9NUY8 699 aa14.15□□□□□ -0.14
MSH5-SAPCD1-206ENST00000491552 BEX4Q9NWD9 120 aaPredicted RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms