RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 H3BNH8 94 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ABCD4O14678 606 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RGS16O15492 202 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ARPC5O15511 151 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FLRT2O43155 660 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PSMD3O43242 534 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 COCHO43405 550 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TNFSF12O43508 249 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PSTPIP1O43586 416 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 LCMT2O60294 686 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CACNG3O60359 315 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MRPS14O60783 128 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PRAF2O60831 178 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SH3BGRLO75368 114 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MTX2O75431 263 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SRSF10O75494 262 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SPAG6O75602 509 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CTAG2O75638 210 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GRAP2O75791 330 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 BCAS2O75934 225 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SRP72O76094 671 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 KCNK2O95069 426 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 AKR7A3O95154 331 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 LYPLA2O95372 231 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 DEXIO95424 95 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PTBP3O95758 552 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IGKV3-15P01624 115 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MT-ND2P03891 347 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FAM86B2P0C5J1 330 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR8G3PP0DMU2 310 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 MCF2P10911 925 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IL7P13232 177 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CD59P13987 128 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GP9P14770 177 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CD1DP15813 335 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 HLA-DPA1P20036 260 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IMPDH1P20839 514 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PRPS1L1P21108 318 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GLRA2P23416 452 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IGFBP5P24593 272 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 DCKP27707 260 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ELK4P28324 431 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GCAP28676 217 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 S100A7P31151 101 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CCR7P32248 378 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SOAT1P35610 550 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 DDOSTP39656 456 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FEN1P39748 380 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACAA2P42765 397 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CDKN2CP42773 168 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SLC1A4P43007 532 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CDX1P47902 265 aaPredicted RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 UQCRFS1P47985 274 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RPL34P49207 117 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CCT3P49368 545 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 LIMK2P53671 638 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NAGLUP54802 743 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NDUFV3P56181 108 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 OR2B6P58173 313 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTBP60709 375 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 AP1S1P61966 158 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTA2P62736 377 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTG1P63261 375 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTG2P63267 376 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTC1P68032 377 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTA1P68133 377 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RBP5P82980 135 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ELP6Q0PNE2 266 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 IL24Q13007 206 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 NME3Q13232 169 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GPR176Q14439 515 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PSMD5Q16401 504 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ECSCRQ19T08 205 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SLC5A12Q1EHB4 618 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 HFEQ30201 348 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SLC36A3Q495N2 470 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 LRRC37A5PQ49AS3 106 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ACTBL2Q562R1 376 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 BEX5Q5H9J7 111 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SPANXN4Q5MJ08 99 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 C6orf52Q5T4I8 152 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 LCE3CQ5T5A8 94 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 AGAP6Q5VW22 663 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GPR107Q5VW38 600 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FAM46CQ5VWP2 391 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RNLSQ5VYX0 342 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 KCTD11Q693B1 232 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TIGD3Q6B0B8 471 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FRMPD2BQ6IN97 320 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SLC25A25Q6KCM7 469 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 RPL13AP3Q6NVV1 102 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 ZNF544Q6NX49 715 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 CCDC137Q6PK04 289 aaKnown RBP1.73□□□□□ -2.13
HMGB1-208ENST00000490788 PET117Q6UWS5 81 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 WASH2PQ6VEQ5 465 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 TRIM69Q86WT6 500 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 DHFR2Q86XF0 187 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 GPD1LQ8N335 351 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 FBXW8Q8N3Y1 598 aa1.73□□□□□ -2.13
HMGB1-208ENST00000490788 SFRP1Q8N474 314 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms