RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 C10orf128Q5T292 105 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 KRT80Q6KB66 452 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 SLC25A47Q6Q0C1 308 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 CYP2R1Q6VVX0 501 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 CCDC36Q8IYA8 594 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 NSMAFQ92636 917 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 ANKRD19PQ9H560 264 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 ADAM21Q9UKJ8 722 aa15.68■□□□□ 0.1
COL9A3-214ENST00000490398 HTR3EA5X5Y0 456 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 RNF223E7ERA6 249 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 IMPA2O14732 288 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 PTP4A3O75365 173 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 ZNF35P13682 527 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 PAX7P23759 505 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 SERPINF1P36955 418 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 FXYD6P3P58550 94 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 THSD4Q6ZMP0 1018 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 BIVMQ86UB2 503 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 PAQR4Q8N4S7 273 aaPredicted RBP15.67■□□□□ 0.1
COL9A3-214ENST00000490398 NUP37Q8NFH4 326 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 NABP1Q96AH0 204 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 BDH2Q9BUT1 245 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 IL20RAQ9UHF4 553 aa15.67■□□□□ 0.1
COL9A3-214ENST00000490398 FAM32AQ9Y421 112 aaKnown RBP15.67■□□□□ 0.1
COL9A3-214ENST00000490398 IGHV4-30-2A0A087WSY4 118 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 TMEM129A0AVI4 362 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 CENPBD1B2RD01 187 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 H7C417 338 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 GPRIN2O60269 458 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 PDE5AO76074 875 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 UBL3O95164 117 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 SCG5P05408 212 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 IGFBP1P08833 259 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-214ENST00000490398 MMP7P09237 267 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-214ENST00000490398 OR8G3PP0DMU2 310 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 CCL2P13500 99 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 SLC9A3P48764 834 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 MS4A2Q01362 244 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 CD47Q08722 323 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 SNTB2Q13425 540 aaKnown RBP15.66■□□□□ 0.1
COL9A3-214ENST00000490398 ZBED5Q49AG3 693 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 CLEC9AQ6UXN8 241 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 LRRC18Q8N456 261 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 OR4F15Q8NGB8 312 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 CLPTM1LQ96KA5 538 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 Q96M85 177 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 MOV10Q9HCE1 1003 aaKnown RBP15.66■□□□□ 0.1
COL9A3-214ENST00000490398 SVEP1Q4LDE5 3571 aa15.66■□□□□ 0.1
COL9A3-214ENST00000490398 C2CD3Q4AC94 2353 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 NSD1Q96L73 2696 aaPredicted RBP15.65■□□□□ 0.1
COL9A3-214ENST00000490398 TCRBV5S2A0A599 114 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 SH3PXD2BA1X283 911 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 RAB36O95755 333 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 ZNF84P51523 738 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 SPIBQ01892 262 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 KRTAP1-1Q07627 177 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 DBPQ10586 325 aaPredicted RBP15.65■□□□□ 0.1
COL9A3-214ENST00000490398 DAG1Q14118 895 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 MESTQ5EB52 335 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 SLC16A14Q7RTX9 510 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 FAM122BQ7Z309 247 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 ZER1Q7Z7L7 766 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 CDK20Q8IZL9 346 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 ZCCHC24Q8N2G6 241 aaKnown RBP15.65■□□□□ 0.1
COL9A3-214ENST00000490398 ZNF525Q8N782 197 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 ARIH2OSQ8N7S6 290 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 NANOS1Q8WY41 292 aaKnown RBP15.65■□□□□ 0.1
COL9A3-214ENST00000490398 SORCS2Q96PQ0 1159 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 NDE1Q9NXR1 346 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 SIGLEC7Q9Y286 467 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 DNHD1Q96M86 4753 aa15.65■□□□□ 0.1
COL9A3-214ENST00000490398 SERPINA5P05154 406 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 CD14P08571 375 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 NR4A1P22736 598 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 RPL4P36578 427 aaKnown RBP15.64■□□□□ 0.09
COL9A3-214ENST00000490398 NUDT6P53370 316 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 CHRNB3Q05901 458 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 RAB35Q15286 201 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 TAF11Q15544 211 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 EFNB3Q15768 340 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 ETFDHQ16134 617 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 SGCAQ16586 387 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 OTPQ5XKR4 325 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 RRM2BQ7LG56 351 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 LRP11Q86VZ4 500 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 SVOPLQ8N434 492 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 RASD2Q96D21 266 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 RSRC1Q96IZ7 334 aaKnown RBP15.64■□□□□ 0.09
COL9A3-214ENST00000490398 FOXN4Q96NZ1 517 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 ALG12Q9BV10 488 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 PLK3Q9H4B4 646 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 ZNF442Q9H7R0 627 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 ACTR3BQ9P1U1 418 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 TMEM5Q9Y2B1 443 aa15.64■□□□□ 0.09
COL9A3-214ENST00000490398 CSPG4Q6UVK1 2322 aa15.63■□□□□ 0.09
COL9A3-214ENST00000490398 TLN2Q9Y4G6 2542 aa15.63■□□□□ 0.09
COL9A3-214ENST00000490398 B9A039 149 aa15.63■□□□□ 0.09
COL9A3-214ENST00000490398 MGRN1O60291 552 aa15.63■□□□□ 0.09
COL9A3-214ENST00000490398 GADD45GO95257 159 aa15.63■□□□□ 0.09
COL9A3-214ENST00000490398 FARS2O95363 451 aaKnown RBP15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms