RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 OR4Q3Q8NH05 313 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 OR4K13Q8NH42 304 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 HDAC2Q92769 488 aaKnown RBP9.07□□□□□ -0.96
SKA1-204ENST00000488454 KISS1RQ969F8 398 aaPredicted RBP9.07□□□□□ -0.96
SKA1-204ENST00000488454 MCHR2Q969V1 340 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 ALKBH3Q96Q83 286 aaPredicted RBP9.07□□□□□ -0.96
SKA1-204ENST00000488454 SLC38A2Q96QD8 506 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 SLC29A1Q99808 456 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 VCX3BQ9H321 246 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 GPR35Q9HC97 309 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 GALNT8Q9NY28 637 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 TAS2R16Q9NYV7 291 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 NKX1-2Q9UD57 310 aaPredicted RBP9.07□□□□□ -0.96
SKA1-204ENST00000488454 MALT1Q9UDY8 824 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 NDRG3Q9UGV2 375 aa9.07□□□□□ -0.96
SKA1-204ENST00000488454 TMEFF2Q9UIK5 374 aaPredicted RBP9.07□□□□□ -0.96
SKA1-204ENST00000488454 KLF2Q9Y5W3 355 aaPredicted RBP9.07□□□□□ -0.96
SKA1-204ENST00000488454 SLC22A23A1A5C7 686 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 CLEC18AA5D8T8 446 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 RPL36A-HNRNPH2H7BZ11 118 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 CASQ2O14958 399 aaPredicted RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 DHHO43323 396 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 SLC16A7O60669 478 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 LYZL6O75951 148 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 ATP6V1G2O95670 118 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 ZNF3P17036 446 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 PSMB1P20618 241 aaKnown RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 PAICSP22234 425 aaKnown RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 PEX2P28328 305 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 CRABP1P29762 137 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 HOXC12P31275 282 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 CDKN2AP42771 156 aaKnown RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 CENPAP49450 140 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 PCYT1AP49585 367 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 SH3BGRP55822 239 aaPredicted RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 LGALS3BPQ08380 585 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 SNAPC1Q16533 368 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 HIST3H3Q16695 136 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 CEACAM16Q2WEN9 425 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 ZIK1Q3SY52 487 aaPredicted RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 MESTQ5EB52 335 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 PHYHD1Q5SRE7 291 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 TMEM236Q5W0B7 351 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 ACSM5Q6NUN0 579 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 LRFN4Q6PJG9 635 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 CLEC18BQ6UXF7 455 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 STAC2Q6ZMT1 411 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 BHLHA15Q7RTS1 189 aaPredicted RBP9.06□□□□□ -0.96
SKA1-204ENST00000488454 CLEC18CQ8NCF0 446 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 ZNF555Q8NEP9 628 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 NSMAFQ92636 917 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 OTULINQ96BN8 352 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 RDH12Q96NR8 316 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 SNX18Q96RF0 628 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 NMNAT3Q96T66 252 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 GABARAPL3Q9BY60 117 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 RERGLQ9H628 205 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 SLC25A19Q9HC21 320 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 TVP23BQ9NYZ1 205 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 ARHGAP21Q5T5U3 1957 aa9.06□□□□□ -0.96
SKA1-204ENST00000488454 MED12LQ86YW9 2145 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 DOCK7Q96N67 2140 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 RELNP78509 3460 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 ZAR1LA6NP61 321 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 ZNF99A8MXY4 864 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 PRSS44E7EML9 344 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 H7C1C5 153 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 KHDRBS3O75525 346 aaKnown RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 FARS2O95363 451 aaKnown RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 RNF224P0DH78 156 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 PPP3CBP16298 524 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 UGT2B10P36537 528 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 LCN6P62502 163 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 ARF1P84077 181 aaKnown RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 SORDQ00796 357 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 STK11Q15831 433 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 OGFRL1Q5TC84 451 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 ANKRD16Q6P6B7 361 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 KLHL24Q6TFL4 600 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 C20orf204Q6ZNR8 217 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 C8orf86Q6ZUL3 223 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 P2RY8Q86VZ1 359 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 WDFY1Q8IWB7 410 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 ZNF433Q8N7K0 673 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 SLC37A3Q8NCC5 494 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 C1orf162Q8NEQ5 155 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 SDR9C7Q8NEX9 313 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 MUCL1Q96DR8 90 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 FOXB1Q99853 325 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 OR10A4Q9H209 315 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 SYT4Q9H2B2 425 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 KCNN2Q9H2S1 579 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 TOR3AQ9H497 397 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 SEC61A2Q9H9S3 476 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 SRA1Q9HD15 236 aaKnown RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 CMC2Q9NRP2 79 aa9.05□□□□□ -0.96
SKA1-204ENST00000488454 SMPD3Q9NY59 655 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 VSX1Q9NZR4 365 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 H2AFY2Q9P0M6 372 aaPredicted RBP9.05□□□□□ -0.96
SKA1-204ENST00000488454 DIDO1Q9BTC0 2240 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms