RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CPT2P23786 658 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 FKBP2P26885 142 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 GTF2E2P29084 291 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 CRHR1P34998 444 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 GNALP38405 381 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 ERFP50548 548 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 BMXP51813 675 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 POLR2HP52434 150 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 RPS26P62854 115 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 FUT5Q11128 374 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 CAMK2DQ13557 499 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SMU1Q2TAY7 513 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SPIN4Q56A73 249 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 METTL11BQ5VVY1 283 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 METTL2BQ6P1Q9 378 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 CNGA4Q8IV77 575 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 LRRC8AQ8IWT6 810 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 Q8N7P7 452 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 BEND2Q8NDZ0 799 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 OR5AU1Q8NGC0 362 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 C8orf46Q8TAG6 207 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 ZNF483Q8TF39 744 aaPredicted RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 NSMAFQ92636 917 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 TNFRSF14Q92956 283 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 MYDGFQ969H8 173 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 CHMP6Q96FZ7 201 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 OR2V2Q96R30 315 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 NKX3-1Q99801 234 aaPredicted RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 FOXB1Q99853 325 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SSX3Q99909 188 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SH3GL3Q99963 347 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 EMC6Q9BV81 110 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 ACTRT3Q9BYD9 372 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 BCL2L14Q9BZR8 327 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 NPFFR1Q9GZQ6 430 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 ZNF350Q9GZX5 532 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 CDH20Q9HBT6 801 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SIRT7Q9NRC8 400 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 ZCCHC3Q9NUD5 404 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 DNAJB11Q9UBS4 358 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SCOCQ9UIL1 159 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 ZDHHC8Q9ULC8 765 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 SNX6Q9UNH7 406 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 RASD1Q9Y272 281 aa3.86□□□□□ -1.79
USP4-209ENST00000475873 TNPO3Q9Y5L0 923 aaKnown RBP3.86□□□□□ -1.79
USP4-209ENST00000475873 LOC100509620A0A075B734 347 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 PLSCR5A0PG75 271 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 PRAMEF27A3QJZ7 478 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 NKX6-3A6NJ46 265 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 SYCE1LA8MT33 242 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 BOLA2-SMG1P6H3BVE0 249 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 DNALI1O14645 258 aaPredicted RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 HDAC3O15379 428 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 RAMP3O60896 148 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 SCN2BO60939 215 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 VAMP5O95183 116 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 MMP7P09237 267 aaPredicted RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 SBK3P0C264 359 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 DUX4L4P0CJ87 422 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 ZNF43P17038 809 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 CXCR5P32302 372 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 LSP1P33241 339 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 ACAA2P42765 397 aaKnown RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 THBS3P49746 956 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 ETF1P62495 437 aaKnown RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 GUCY2DQ02846 1103 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 EGR4Q05215 589 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 PSG7Q13046 419 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 NPTX1Q15818 432 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 MOGQ16653 247 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 ZNF718Q3SXZ3 478 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 ARSJQ5FYB0 599 aaPredicted RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 MTX3Q5HYI7 312 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 HCP5Q6MZN7 132 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 METAP1DQ6UB28 335 aaPredicted RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 EIF3MQ7L2H7 374 aaKnown RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 VASH1Q7L8A9 365 aaPredicted RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 ARL6IP6Q8N6S5 226 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 PIK3C3Q8NEB9 887 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 OR2Z1Q8NG97 314 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 SLC7A13Q8TCU3 470 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 TXNDC15Q96J42 360 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 LYZL4Q96KX0 146 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 C3orf30Q96M34 536 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 TECTBQ96PL2 329 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 OR7D2Q96RA2 312 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 KCNA7Q96RP8 456 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 DESI2Q9BSY9 194 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 DCTN5Q9BTE1 182 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 MECRQ9BV79 373 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 GPR61Q9BZJ8 451 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 IQCGQ9H095 443 aaKnown RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 KCNK9Q9NPC2 374 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 A4GALTQ9NPC4 353 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 EXOSC3Q9NQT5 275 aaKnown RBP3.85□□□□□ -1.79
USP4-209ENST00000475873 NMRK1Q9NWW6 199 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 KIF17Q9P2E2 1029 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 TIMM22Q9Y584 194 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 SMAD5-AS1Q9Y6J3 95 aa3.85□□□□□ -1.79
USP4-209ENST00000475873 APOBP04114 4563 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms