RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 ALG10Q5BKT4 473 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 C6orf52Q5T4I8 152 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 TSEN54Q7Z6J9 526 aaKnown RBP16.7■□□□□ 0.26
USP40-207ENST00000450940 LRRC75AQ8NAA5 344 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 SYT14Q8NB59 555 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 ACOT11Q8WXI4 607 aaPredicted RBP16.7■□□□□ 0.26
USP40-207ENST00000450940 KCNK17Q96T54 332 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 PIMREGQ9BSJ6 248 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 MRPL37Q9BZE1 423 aaKnown RBP16.7■□□□□ 0.26
USP40-207ENST00000450940 C1orf198Q9H425 327 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 SLC7A8Q9UHI5 535 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 UGT2A1Q9Y4X1 527 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 MALRD1Q5VYJ5 2156 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 KIAA1324LA8MWY0 1029 aaPredicted RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 J3KTA2 159 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 GSTA4O15217 222 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 SYNGR3O43761 229 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 ZNF682O95780 498 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 SERPINA1P01009 418 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 ERCC1P07992 297 aaPredicted RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 MMP7P09237 267 aaPredicted RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 MAKP20794 623 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 YAP1P46937 504 aaKnown RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 RPS23P62266 143 aaKnown RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 GALK2Q01415 458 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 TMEM53Q6P2H8 277 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 SLC16A14Q7RTX9 510 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 NRMQ8IXM6 262 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 ZCCHC24Q8N2G6 241 aaKnown RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 ZNF540Q8NDQ6 660 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 HDAC2Q92769 488 aaKnown RBP16.69■□□□□ 0.26
USP40-207ENST00000450940 HSH2DQ96JZ2 352 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 ALG12Q9BV10 488 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 SIAEQ9HAT2 523 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 TMEM160Q9NX00 188 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 RHCGQ9UBD6 479 aa16.69■□□□□ 0.26
USP40-207ENST00000450940 A0A087WUU8 490 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 SNX3O60493 162 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 STAMBPO95630 424 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 SNAP29O95721 258 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 IGHV4-31P0DP07 118 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 NR2C1P13056 603 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 DRD4P21917 467 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 LSP1P33241 339 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 SLC9A3P48764 834 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 PSME3P61289 254 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 RPL27P61353 136 aaKnown RBP16.68■□□□□ 0.26
USP40-207ENST00000450940 CYB5R2Q6BCY4 276 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 SLC25A47Q6Q0C1 308 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 MBOAT2Q6ZWT7 520 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 ZNF786Q8N393 782 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 FAM156AQ8NDB6 213 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 SLC30A7Q8NEW0 376 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 NABP1Q96AH0 204 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 KCTD14Q9BQ13 255 aaPredicted RBP16.68■□□□□ 0.26
USP40-207ENST00000450940 ANKRD19PQ9H560 264 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 DYNLRB1Q9NP97 96 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 ENPP4Q9Y6X5 453 aa16.68■□□□□ 0.26
USP40-207ENST00000450940 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.68■□□□□ 0.269e-8■■■■■ 29.1
USP40-207ENST00000450940 ATRQ13535 2644 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 IGKV1D-43A0A0B4J1Z2 117 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 SLC22A23A1A5C7 686 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 SH3PXD2BA1X283 911 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 PTHP01270 115 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 ADRA2AP08913 450 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 DAOP14920 347 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 THEM4Q5T1C6 240 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 GKAP1Q5VSY0 366 aaPredicted RBP16.67■□□□□ 0.26
USP40-207ENST00000450940 FAM205BPQ63HN1 556 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 TMPRSS11FQ6ZWK6 438 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 FKBP9P1Q75LS8 142 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 PAQR4Q8N4S7 273 aaPredicted RBP16.67■□□□□ 0.26
USP40-207ENST00000450940 FNDC8Q8TC99 324 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 MS4A5Q9H3V2 200 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 RNF121Q9H920 327 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 REV1Q9UBZ9 1251 aa16.67■□□□□ 0.26
USP40-207ENST00000450940 ZNF346Q9UL40 294 aaKnown RBP16.67■□□□□ 0.26
USP40-207ENST00000450940 FBN1P35555 2871 aaKnown RBP16.67■□□□□ 0.26
USP40-207ENST00000450940 IGHV4-61A0A0C4DH41 118 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 GMNCA6NCL1 334 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 EFCAB9A8MZ26 197 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 SLC2A10O95528 541 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 SAGP10523 405 aaPredicted RBP16.66■□□□□ 0.26
USP40-207ENST00000450940 NCK1P16333 377 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 GZMKP49863 264 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 CTXN1P60606 82 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 GGTLC2Q14390 218 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 FAM27BQ5VT28 67 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 OAFQ86UD1 273 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 LRP11Q86VZ4 500 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 RBM15BQ8NDT2 890 aaKnown RBP16.66■□□□□ 0.26
USP40-207ENST00000450940 OR1J2Q8NGS2 313 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 OR51A7Q8NH64 312 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 ZNF519Q8TB69 540 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 UBASH3BQ8TF42 649 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 FAM162AQ96A26 154 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 RBP7Q96R05 134 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 NMNAT1Q9HAN9 279 aaPredicted RBP16.66■□□□□ 0.26
USP40-207ENST00000450940 SPAG4Q9NPE6 437 aa16.66■□□□□ 0.26
USP40-207ENST00000450940 RPS6KA6Q9UK32 745 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms