RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GUCA1AP43080 201 aaPredicted RBP11.36□□□□□ -0.59
HMGB3-204ENST00000448905 IDH3AP50213 366 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 HILS1P60008 231 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 HSF2Q03933 536 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 SLC3A1Q07837 685 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF74Q16587 644 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 CYP51A1Q16850 503 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 AGKQ53H12 422 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 ENTPD8Q5MY95 495 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 WDR88Q6ZMY6 472 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 RETREG3Q86VR2 466 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 COMTD1Q86VU5 262 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF584Q8IVC4 421 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 MSRB3Q8IXL7 192 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 ICA1LQ8NDH6 482 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 RBM15BQ8NDT2 890 aaKnown RBP11.36□□□□□ -0.59
HMGB3-204ENST00000448905 SEMA6DQ8NFY4 1073 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 OR4K5Q8NGD3 323 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 FGFBP3Q8TAT2 258 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 RASSF5Q8WWW0 418 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 C7orf26Q96N11 449 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 EGLN1Q9GZT9 426 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 SLCO1B3Q9NPD5 702 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 STX18Q9P2W9 335 aaKnown RBP11.36□□□□□ -0.59
HMGB3-204ENST00000448905 PLCE1Q9P212 2302 aa11.36□□□□□ -0.59
HMGB3-204ENST00000448905 IGLV3-9A0A075B6K5 115 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 TRAPPC13A5PLN9 417 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CPSF4LA6NMK7 179 aaKnown RBP11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CENPBD1B2RD01 187 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 MCIDASD6RGH6 385 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 PLPP2O43688 288 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 RGS9O75916 674 aaPredicted RBP11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CLPTM1O96005 669 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CCL2P13500 99 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CD247P20963 164 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CCNOP22674 350 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 LIPAP38571 399 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 NPTX1Q15818 432 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 DUSP7Q16829 419 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF718Q3SXZ3 478 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 RUNDC3AQ59EK9 446 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 INTS11Q5TA45 600 aaKnown RBP11.35□□□□□ -0.59
HMGB3-204ENST00000448905 DCAF12L2Q5VW00 463 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 RBMS3Q6XE24 437 aaKnown RBP11.35□□□□□ -0.59
HMGB3-204ENST00000448905 PATL1Q86TB9 770 aaKnown RBP11.35□□□□□ -0.59
HMGB3-204ENST00000448905 BPIFB2Q8N4F0 458 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 OR1J1Q8NGS3 322 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 LRRC8CQ8TDW0 803 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 ADAMTS16Q8TE57 1224 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 MCHR2Q969V1 340 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 OR51B6Q9H340 312 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 SAP30LQ9HAJ7 183 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 SIAEQ9HAT2 523 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 NTN4Q9HB63 628 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CCNB1IP1Q9NPC3 277 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 CYSLTR2Q9NS75 346 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 LEF1Q9UJU2 399 aaPredicted RBP11.35□□□□□ -0.59
HMGB3-204ENST00000448905 SLC7A7Q9UM01 511 aa11.35□□□□□ -0.59
HMGB3-204ENST00000448905 M0R3H8 397 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 ERLIN1O75477 346 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 NCR1O76036 304 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 IGHV3-13P01766 116 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 PGA4P0DJD7 388 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 PGA3P0DJD8 388 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 NR2C1P13056 603 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 ATP4BP51164 291 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 ZNF81P51508 661 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 MELKQ14680 651 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 TSTQ16762 297 aaKnown RBP11.34□□□□□ -0.59
HMGB3-204ENST00000448905 AVPI1Q5T686 147 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 USP51Q70EK9 711 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 NANOGNBQ7Z5D8 188 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 WDFY1Q8IWB7 410 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 ALDH16A1Q8IZ83 802 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 C10orf111Q8N326 155 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 LRRC17Q8N6Y2 441 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 OR6T1Q8NGN1 323 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 CCL17Q92583 94 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 ELMOD3Q96FG2 381 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 ARHGDIGQ99819 225 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 WFDC6Q9BQY6 131 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 C7orf69Q9H7B7 122 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 G6PC2Q9NQR9 355 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 DDX28Q9NUL7 540 aaKnown RBP11.34□□□□□ -0.59
HMGB3-204ENST00000448905 NDUFAF1Q9Y375 327 aa11.34□□□□□ -0.59
HMGB3-204ENST00000448905 LOC105371242A0A075B767 164 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 TRBV5-3A0A0A0MS03 114 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 KPNA4O00629 521 aaPredicted RBP11.33□□□□□ -0.6
HMGB3-204ENST00000448905 ANGPT2O15123 496 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 WIPF1O43516 503 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 STOMP27105 288 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 DAP3P51398 398 aaKnown RBP11.33□□□□□ -0.6
HMGB3-204ENST00000448905 ARFIP2P53365 341 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 PCBP3P57721 371 aaKnown RBP11.33□□□□□ -0.6
HMGB3-204ENST00000448905 HIST3H3Q16695 136 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 ARL9Q6T311 187 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 DLEU7Q6UYE1 221 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 C1QL2Q7Z5L3 287 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 LRRC18Q8N456 261 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 PAQR4Q8N4S7 273 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms