RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SGCEO43556 437 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 UPK1BO75841 260 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 TNFRSF1BP20333 461 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 RPS16P62249 146 aaKnown RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 MLLT11Q13015 90 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 GAB1Q13480 694 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 DEFB109BQ30KR1 87 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SLC35D3Q5M8T2 416 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 H1FNTQ75WM6 255 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 TMIGD2Q96BF3 282 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 OR2M2Q96R28 347 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ALG12Q9BV10 488 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SLC35D1Q9NTN3 355 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 A0A0B4J203 849 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ADAM10O14672 748 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 HCRTR1O43613 425 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 AIFM1O95831 613 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 HPNP05981 417 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SLC5A12Q1EHB4 618 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 KMT5CQ86Y97 462 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 OR52H1Q8NGJ2 320 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 KHSRPQ92945 711 aaKnown RBP eCLIP6.33□□□□□ -1.42e-6■■■□□ 17.2
SCN1A-204ENST00000423058 SEC22CQ9BRL7 303 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 AAMDCQ9H7C9 122 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 LYRM4Q9HD34 91 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ONECUT1Q9UBC0 465 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 TIMM9Q9Y5J7 89 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 KDM3BQ7LBC6 1761 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 RNASEK-C17orf49H0YIS7 233 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 TNFSF15O95150 251 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SFTPCP11686 197 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 GM2AP17900 193 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 GLRA1P23415 457 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 GMPRP36959 345 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 AMTP48728 403 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ELAVL1Q15717 326 aaKnown RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 PRAMEF5Q5TYX0 476 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 PRAMEF6Q5VXH4 476 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 MBOAT2Q6ZWT7 520 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 OR2AK2Q8NG84 335 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 OR2A14Q96R47 310 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 PHF7Q9BWX1 381 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF785A8K8V0 405 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 BHLHE40O14503 412 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 SNRNP70P08621 437 aaKnown RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 S100A4P26447 101 aaKnown RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 DUSP1P28562 367 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 EVI2BP34910 448 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 PIGFQ07326 219 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 CLN3Q13286 438 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 CDK5R2Q13319 367 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 RPL7L1Q6DKI1 246 aaKnown RBP6.33□□□□□ -1.4
SCN1A-204ENST00000423058 GRINAQ7Z429 371 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 COMMD5Q9GZQ3 224 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 RNF150Q9ULK6 438 aa6.33□□□□□ -1.4
SCN1A-204ENST00000423058 LOC100289279A0A1B0GTE1 492 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MYADML2A6NDP7 307 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 STMND1H3BQB6 276 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 H7BYZ3 331 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 RAB27BO00194 218 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 GLULP15104 373 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 SMIM21Q3B7S5 101 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 NHSL2Q5HYW2 709 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 KDM8Q8N371 416 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 SUMF1Q8NBK3 374 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR10G3Q8NGC4 313 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR8J2Q8NGG1 315 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 GGHQ92820 318 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 EDEM2Q9BV94 578 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 EXOSC3Q9NQT5 275 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 AMMECR1Q9Y4X0 333 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 NUDT19A8MXV4 375 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 DNASE2O00115 360 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 GYPBP06028 91 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 SLC35E2P0CK97 266 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 GIFP27352 417 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 NKAIN1Q4KMZ8 207 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TANGO2Q6ICL3 276 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR8G2PQ6IF36 304 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MDGA2Q7Z553 956 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MEX3DQ86XN8 651 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 VRK2Q86Y07 508 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 IGDCC3Q8IVU1 814 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 OR5B3Q8NH48 314 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 NRIP3Q9NQ35 241 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 GAR1Q9NY12 217 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 HEATR1Q9H583 2144 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 A0A087WZY1 265 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MEIOCA2RUB1 952 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MT-ND4LP03901 98 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 PVRP15151 417 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 PPP3CBP16298 524 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 FCER1GP30273 86 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 MAT1AQ00266 395 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 RPS19BP1Q86WX3 136 aaKnown RBP6.32□□□□□ -1.4
SCN1A-204ENST00000423058 ADGRF3Q8IZF5 1079 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 PGBD5Q8N414 524 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 PHYHIPQ92561 330 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 TAAR6Q96RI8 345 aa6.32□□□□□ -1.4
SCN1A-204ENST00000423058 DRGXA6NNA5 263 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms