RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 LRG1P02750 347 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ZNF888P0CJ79 500 aaPredicted RBP9.7□□□□□ -0.86
USP54-204ENST00000422491 LIPCP11150 499 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 CPMP14384 443 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 MAP3K8P41279 467 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 EMDP50402 254 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 CAP1Q01518 475 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 TOMM20Q15388 145 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 PNLIPRP3Q17RR3 467 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 DEFB115Q30KQ5 88 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 NKAPLQ5M9Q1 402 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ABHD13Q7L211 337 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 LYG2Q86SG7 212 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 CDRT4Q8N9R6 151 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 GPR148Q8TDV2 347 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 MITD1Q8WV92 249 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 TMED6Q8WW62 240 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ARL5BQ96KC2 179 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 SLC6A7Q99884 636 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 SELENOIQ9C0D9 397 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 ATG5Q9H1Y0 275 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 CYTL1Q9NRR1 136 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 DNAJB12Q9NXW2 375 aaKnown RBP9.7□□□□□ -0.86
USP54-204ENST00000422491 MAFFQ9ULX9 164 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 FAM96BQ9Y3D0 163 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 PDE4DIPQ5VU43 2346 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 SCN5AQ14524 2016 aa9.7□□□□□ -0.86
USP54-204ENST00000422491 SLC17A2O00624 439 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 TO15178 435 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF208O43345 1280 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 GATCO43716 136 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 NARSO43776 548 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 DOK2O60496 412 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 FARS2O95363 451 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 CD14P08571 375 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 MUC1P15941 1255 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 S100PP25815 95 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 CDKN2AP42771 156 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 PPP1R1AQ13522 171 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 RAB11BQ15907 218 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 EIF2S3LQ2VIR3 472 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 TMEM52BQ4KMG9 183 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 PRRT3Q5FWE3 981 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF425Q6IV72 752 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 LEG1Q6P5S2 330 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 DRAM2Q6UX65 266 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP54-204ENST00000422491 VN1R4Q7Z5H5 301 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SLC25A42Q86VD7 318 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 PRSS35Q8N3Z0 413 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 BPIFB2Q8N4F0 458 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF676Q8N7Q3 588 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 EXD3Q8N9H8 876 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 OR4K17Q8NGC6 315 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 GAL3ST3Q96A11 431 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ADAD1Q96M93 576 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 TSSK2Q96PF2 358 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ULBP3Q9BZM4 244 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 TRIM2Q9C040 744 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 TMEM74BQ9NUR3 256 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SPTBP11277 2137 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 TRBV6-7A0A0A0MS04 114 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 PMS2P1A4D2B8 440 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 LRRC72A6NJI9 287 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 TMEM212A6NML5 194 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 EFCAB7A8K855 629 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF705EA8MWA4 302 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 DNAJB6O75190 326 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 NDUFS6O75380 124 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 FBXO45P0C2W1 286 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 DDX6P26196 483 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP54-204ENST00000422491 PPICP45877 212 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ID2Q02363 134 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SMCO1Q147U7 214 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ASPHD2Q6ICH7 369 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZCCHC12Q6PEW1 402 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 KIRREL2Q6UWL6 708 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 NAA40Q86UY6 237 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 CDC20BQ86Y33 519 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 C15orf54Q8N8G6 183 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 OR52E1Q8NGJ3 308 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 OR10R2Q8NGX6 335 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 PMM1Q92871 262 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 MRGPRFQ96AM1 343 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 COMMD4Q9H0A8 199 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 CST11Q9H112 138 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 MSRAQ9UJ68 235 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 WNT6Q9Y6F9 365 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 C9orf170A2RU37 121 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 C1orf196B1AJZ1 125 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 ZNF736B4DX44 427 aaPredicted RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 P2RX6O15547 441 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 LATO43561 262 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 PCCBP05166 539 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 DCNP07585 359 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 AVPR2P30518 371 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 SDHAP31040 664 aa9.69□□□□□ -0.86
USP54-204ENST00000422491 RPS4XP62701 263 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 AIMP2Q13155 320 aaKnown RBP9.69□□□□□ -0.86
USP54-204ENST00000422491 ODF4Q2M2E3 257 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms