RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 A0A1W2PRQ8 180 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 ZNF587BE7ETH6 402 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 H3BNX3 289 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 TIPRLO75663 272 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 KRT33AO76009 404 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 GADD45GO95257 159 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 CRYAAP02489 173 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 MT-ND1P03886 318 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 H1F0P07305 194 aaKnown RBP11.13□□□□□ -0.63
LINC00339-202ENST00000416769 TACSTD2P09758 323 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 FASP25445 335 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 GIFP27352 417 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 PPOXP50336 477 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 CDH15P55291 814 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 ARF1P84077 181 aaKnown RBP11.13□□□□□ -0.63
LINC00339-202ENST00000416769 ROR2Q01974 943 aaKnown RBP11.13□□□□□ -0.63
LINC00339-202ENST00000416769 NPRL3Q12980 569 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 DGCR6Q14129 220 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 GK3PQ14409 553 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 PHYHD1Q5SRE7 291 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 CREB3L2Q70SY1 520 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 NKAIN4Q8IVV8 208 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 RNF113BQ8IZP6 322 aaKnown RBP11.13□□□□□ -0.63
LINC00339-202ENST00000416769 RFLNBQ8N5W9 214 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 POMGNT2Q8NAT1 580 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 SEMA6DQ8NFY4 1073 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 STMN2Q93045 179 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 RHCGQ9UBD6 479 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 DNAJB9Q9UBS3 223 aa11.13□□□□□ -0.63
LINC00339-202ENST00000416769 ARPC4-TTLL3A0A0A6YYG9 625 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 IGHV2OR16-5A0A0B4J2B6 119 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 A8MVM7 634 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 FAM157AC9JC47 383 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 H0YHG0 523 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 GNGT2O14610 69 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 DEAF1O75398 565 aaPredicted RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 ADRA2AP08913 450 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 RRM2P31350 389 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 RBM34P42696 430 aaKnown RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 UBE2NP61088 152 aaKnown RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 SPIBQ01892 262 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 RIN1Q13671 783 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 ATP6AP1Q15904 470 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 TTC33Q6PID6 262 aaPredicted RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 THSD4Q6ZMP0 1018 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 LINC01356Q8N9X3 169 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 RNF217Q8TC41 542 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 STK35Q8TDR2 534 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 LRTOMTQ8WZ04 291 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 BOD1Q96IK1 185 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 KCNS3Q9BQ31 491 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 TMEM43Q9BTV4 400 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 ZNF426Q9BUY5 554 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 PTDSS2Q9BVG9 487 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 SF3B5Q9BWJ5 86 aaKnown RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 OCEL1Q9H607 264 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 METTL17Q9H7H0 456 aaPredicted RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 MYOZ1Q9NP98 299 aaPredicted RBP11.12□□□□□ -0.63
LINC00339-202ENST00000416769 MAN2C1Q9NTJ4 1040 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 ARHGAP32A7KAX9 2087 aa11.12□□□□□ -0.63
LINC00339-202ENST00000416769 HTR3EA5X5Y0 456 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 OR6C65A6NJZ3 312 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 TNFRSF11BO00300 401 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 IGF2P01344 180 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 IGKV3-15P01624 115 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 IFNGR1P15260 489 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 NPR2P20594 1047 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 FUT4P22083 530 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 LIMS1P48059 325 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 CHN2P52757 468 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 CLDN17P56750 224 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 IL1RL1Q01638 556 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 MAD2L1BPQ15013 274 aaPredicted RBP11.11□□□□□ -0.63
LINC00339-202ENST00000416769 C1orf140Q5VVS0 124 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 TMEM225Q6GV28 225 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 KRT80Q6KB66 452 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 C5orf46Q6UWT4 87 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 C12orf54Q6X4T0 127 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 RRM2BQ7LG56 351 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 MDP1Q86V88 176 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 ZNF786Q8N393 782 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 LINC00471Q8N535 108 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 TMEM239Q8WW34 195 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 ACOT11Q8WXI4 607 aaPredicted RBP11.11□□□□□ -0.63
LINC00339-202ENST00000416769 SLC25A36Q96CQ1 311 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 EPYCQ99645 322 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 FUZQ9BT04 418 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 SLC19A3Q9BZV2 496 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 RAB1BQ9H0U4 201 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 DCLRE1BQ9H816 532 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 REEP1Q9H902 201 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 DYNLRB1Q9NP97 96 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 OBP2BQ9NPH6 170 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 MYEF2Q9P2K5 600 aaKnown RBP11.11□□□□□ -0.63
LINC00339-202ENST00000416769 B3GAT1Q9P2W7 334 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 TMCC3Q9ULS5 477 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 RRP15Q9Y3B9 282 aaKnown RBP11.11□□□□□ -0.63
LINC00339-202ENST00000416769 LYVE1Q9Y5Y7 322 aa11.11□□□□□ -0.63
LINC00339-202ENST00000416769 MEGF8Q7Z7M0 2845 aa11.1□□□□□ -0.63
LINC00339-202ENST00000416769 A0A087WUU8 490 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms