RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PATL1Q86TB9 770 aaKnown RBP9.89□□□□□ -0.83
USP4-204ENST00000416417 MEX3DQ86XN8 651 aaKnown RBP9.89□□□□□ -0.83
USP4-204ENST00000416417 RFLNBQ8N5W9 214 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 LRRC37BQ96QE4 947 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 ZNF426Q9BUY5 554 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 RACGAP1Q9H0H5 632 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 RABEP2Q9H5N1 569 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 ZNF229Q9UJW7 825 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 SH3GLB1Q9Y371 365 aa9.89□□□□□ -0.83
USP4-204ENST00000416417 MCIDASD6RGH6 385 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 TRMUO75648 421 aaKnown RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 FARS2O95363 451 aaKnown RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 IGHG1P01857 330 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 FMODQ06828 376 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 PIN1Q13526 163 aaPredicted RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 LAPTM4AQ15012 233 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 TMEM255AQ5JRV8 349 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 NANOGP8Q6NSW7 305 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 CLDN22Q8N7P3 220 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 RBM15BQ8NDT2 890 aaKnown RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 CPEB3Q8NE35 698 aaKnown RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 NOXO1Q8NFA2 376 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 SYNPRQ8TBG9 265 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 ASB10Q8WXI3 467 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 NSMAFQ92636 917 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 TMEM186Q96B77 213 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 DENND2DQ9H6A0 471 aaPredicted RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 EVA1AQ9H8M9 152 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 NANOGQ9H9S0 305 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 HINT3Q9NQE9 182 aaKnown RBP9.88□□□□□ -0.83
USP4-204ENST00000416417 METRNQ9UJH8 293 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 TRIM33Q9UPN9 1127 aa9.88□□□□□ -0.83
USP4-204ENST00000416417 A0A1W2PRG6 482 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 C17orf100A8MU93 164 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 EDF1O60869 148 aaKnown RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 OR7A10O76100 309 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 AVPP01185 164 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MSMBP08118 114 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 ACADSP16219 412 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 UCP2P55851 309 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 KLF3P57682 345 aaPredicted RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 TAS2R41P59536 307 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 TOP3AQ13472 1001 aaPredicted RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 SGCAQ16586 387 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 HIST3H3Q16695 136 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 TBC1D28Q2M2D7 210 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 PABPC1L2AQ5JQF8 200 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 FAHD2BQ6P2I3 314 aaPredicted RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 TMEM154Q6P9G4 183 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 C1orf229Q6ZS94 237 aaPredicted RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 IGFN1Q86VF2 1251 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 OR1J1Q8NGS3 322 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 AKR7LQ8NHP1 331 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 HDAC2Q92769 488 aaKnown RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 SGTBQ96EQ0 304 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 FAHD2AQ96GK7 314 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MPP4Q96JB8 637 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MAGEB18Q96M61 343 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MRPL13Q9BYD1 178 aaKnown RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 PCDHAC1Q9H158 963 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 INIPQ9NRY2 104 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 GMPR2Q9P2T1 348 aaKnown RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 RIMS3Q9UJD0 308 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 ZNF346Q9UL40 294 aaKnown RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 NBEAL1Q6ZS30 2694 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 IQCMA0A1B0GVH7 501 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 FXYD1O00168 92 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 TPD52L2O43399 206 aaKnown RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 MT-ND1P03886 318 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MMP7P09237 267 aaPredicted RBP9.87□□□□□ -0.83
USP4-204ENST00000416417 ZNF250P15622 560 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MPV17P39210 176 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 ZNF84P51523 738 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 TMEM33P57088 247 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 HSF2Q03933 536 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 SLC36A2Q495M3 483 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 CCDC80Q76M96 950 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 CALHM3Q86XJ0 350 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 MICU2Q8IYU8 434 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 C11orf40Q8WZ69 217 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 TMEM120AQ9BXJ8 343 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 SLC19A3Q9BZV2 496 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 FBXL3Q9UKT7 428 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 UGT2A1Q9Y4X1 527 aa9.87□□□□□ -0.83
USP4-204ENST00000416417 IGLV3-9A0A075B6K5 115 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 LOC100509620A0A075B734 347 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 LOC105371242A0A075B767 164 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 SPRY3O43610 288 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 MGRN1O60291 552 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 TFP02787 698 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ZNF32P17041 273 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 MAKP20794 623 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 APLNRP35414 380 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 WNT5AP41221 380 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 YAP1P46937 504 aaKnown RBP9.86□□□□□ -0.83
USP4-204ENST00000416417 SELENOVP59797 346 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 ERVK-25P63136 954 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 PLP2Q04941 152 aa9.86□□□□□ -0.83
USP4-204ENST00000416417 LRRC23Q53EV4 343 aaPredicted RBP9.86□□□□□ -0.83
USP4-204ENST00000416417 SPRNQ5BIV9 151 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms