RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.36□□□□□ -0.27
USP4-203ENST00000415188 ZNRF4Q8WWF5 429 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 UPRTQ96BW1 309 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 RNF170Q96K19 258 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 OR14A2Q96R54 314 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 TBL1XR1Q9BZK7 514 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 SLITRK2Q9H156 845 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 ING3Q9NXR8 418 aa13.36□□□□□ -0.27
USP4-203ENST00000415188 AIPO00170 330 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 EEF1E1O43324 174 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 HCRTR2O43614 444 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 GSTT2P0CG29 244 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 GSTT2BP0CG30 244 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 ARSBP15848 533 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 ERP29P30040 261 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 NR0B1P51843 470 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 POLR2HP52434 150 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 ALKBH1Q13686 389 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 CBFBQ13951 182 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 CDK10Q15131 360 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 NSDHLQ15738 373 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 EEF1A1P5Q5VTE0 462 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 UBE2J2Q8N2K1 259 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 OR6S1Q8NH40 331 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 CT55Q8WUE5 264 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 OMA1Q96E52 524 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 KTI12Q96EK9 354 aaPredicted RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 ADAD1Q96M93 576 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 DERL3Q96Q80 235 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 TSPAN32Q96QS1 320 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 ABHD1Q96SE0 405 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 TTTY10Q9BZA0 68 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 TGIF2Q9GZN2 237 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 ABCG5Q9H222 651 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 DPAGT1Q9H3H5 408 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 WDR76Q9H967 626 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 AKIRIN1Q9H9L7 192 aaPredicted RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 NOX4Q9NPH5 578 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 BRD7Q9NPI1 651 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 ZNF71Q9NQZ8 489 aaPredicted RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 DHCR7Q9UBM7 475 aaKnown RBP13.35□□□□□ -0.27
USP4-203ENST00000415188 RARRES3Q9UL19 164 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 NUBP2Q9Y5Y2 271 aa13.35□□□□□ -0.27
USP4-203ENST00000415188 MYO18BQ8IUG5 2567 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 SLC25A12O75746 678 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 ABHD16AO95870 558 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 DHFRP00374 187 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 PAHP00439 452 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 CALCBP10092 127 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 SNRPBP14678 240 aaKnown RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 SRMP19623 302 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 S100A1P23297 94 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 PSMB10P40306 273 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 P2RX1P51575 399 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 RAG2P55895 527 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 SCAND1P57086 179 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 RRAS2P62070 204 aaPredicted RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 DBPQ10586 325 aaPredicted RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 DYRK1AQ13627 763 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 EFR3AQ14156 821 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 SGCBQ16585 318 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 Q499Y3 187 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 MESTQ5EB52 335 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 LSRQ86X29 649 aaPredicted RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 OR5H6Q8NGV6 325 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 ZNF671Q8TAW3 534 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 STK35Q8TDR2 534 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 C15orf40Q8WUR7 153 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 AKAP1Q92667 903 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP4-203ENST00000415188 YIPF5Q969M3 257 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 TAAR8Q969N4 342 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 ZNF501Q96CX3 271 aaPredicted RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 VN1R1Q9GZP7 353 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 SLA2Q9H6Q3 261 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 RANGRFQ9HD47 186 aaPredicted RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 FGF21Q9NSA1 209 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 TUBD1Q9UJT1 453 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 PADI1Q9ULC6 663 aa13.34□□□□□ -0.27
USP4-203ENST00000415188 PCDHGA9Q9Y5G4 932 aaKnown RBP13.34□□□□□ -0.27
USP4-203ENST00000415188 TRBV5-5A0A0J9YX44 114 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 OR6C70A6NIJ9 312 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 SULT1B1O43704 296 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 UPK3AO75631 287 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 IGHMP01871 453 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 RAF1P04049 648 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 MRPS10P82664 201 aaKnown RBP13.33□□□□□ -0.28
USP4-203ENST00000415188 ACY1Q03154 408 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 NTRK2Q16620 822 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 SLC22A10Q63ZE4 541 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 FAM199XQ6PEV8 388 aaPredicted RBP13.33□□□□□ -0.28
USP4-203ENST00000415188 LRRN1Q6UXK5 716 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 GRINAQ7Z429 371 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 PRR22Q8IZ63 422 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 TOMM5Q8N4H5 51 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 YIPF7Q8N8F6 280 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 ZNF511Q8NB15 262 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 OR5AK2Q8NH90 309 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 ASB17Q8WXJ9 295 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 ABHD17AQ96GS6 310 aa13.33□□□□□ -0.28
USP4-203ENST00000415188 PDCD1LG2Q9BQ51 273 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms