RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 THOC7Q6I9Y2 204 aaKnown RBP12.09□□□□□ -0.47
VPS54-203ENST00000409558 SLC16A9Q7RTY1 509 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 ZNF248Q8NDW4 579 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 NXPE2Q96DL1 559 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 KLHL15Q96M94 604 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 POLE3Q9NRF9 147 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 TAS2R5Q9NYW4 299 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 NPFFR2Q9Y5X5 522 aa12.09□□□□□ -0.47
VPS54-203ENST00000409558 TRBV11-1A0A0K0K1C0 115 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 RGS11O94810 467 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 CDAP32320 146 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 LAMTOR1Q6IAA8 161 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 GUSBP11Q6P575 273 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 FAM198BQ6UWH4 519 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 ZSCAN1Q8NBB4 408 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 CMBLQ96DG6 245 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 MRPL48Q96GC5 212 aaKnown RBP12.08□□□□□ -0.48
VPS54-203ENST00000409558 ICAM5Q9UMF0 924 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 DENND4AQ7Z401 1863 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 FXYD6-FXYD2A0A087WZ82 144 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 FAM25EA8MYX2 175 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 P2RY10O00398 339 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 ZNF823P16415 610 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 PGCP20142 388 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 CCR9P51686 369 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 C1orf140Q5VVS0 124 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 LINC00114Q6XXX2 140 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 PLXDC1Q8IUK5 500 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 PRSS35Q8N3Z0 413 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 ZFAND1Q8TCF1 268 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 FXYD6Q9H0Q3 95 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 TAS2R4Q9NYW5 299 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 MRTO4Q9UKD2 239 aaKnown RBP12.08□□□□□ -0.48
VPS54-203ENST00000409558 C1QBP02746 253 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 SRFP11831 508 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 DNASE1L1P49184 302 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 NDUFA5Q16718 116 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 C4orf46Q504U0 113 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 UBE2NLQ5JXB2 153 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 GLYATL3Q5SZD4 288 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 MAMDC2Q7Z304 686 aaPredicted RBP12.08□□□□□ -0.48
VPS54-203ENST00000409558 DCXRQ7Z4W1 244 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 CD163Q86VB7 1156 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 SLITRK4Q8IW52 837 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 ARHGEF39Q8N4T4 335 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 GDF15Q99988 308 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 SMOC1Q9H4F8 434 aa12.08□□□□□ -0.48
VPS54-203ENST00000409558 NPIPA5E9PKD4 350 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 UPK3AO75631 287 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 CELA2AP08217 269 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 TAS2R20P59543 309 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 TRAM1Q15629 374 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 FAM122BQ7Z309 247 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 PLCZ1Q86YW0 608 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 UBE2ZQ9H832 354 aaPredicted RBP12.07□□□□□ -0.48
VPS54-203ENST00000409558 PRDM6Q9NQX0 595 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 ABRACLQ9P1F3 81 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 NPIPA1Q9UND3 350 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 HIF3AQ9Y2N7 669 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 IGKV1D-43A0A0B4J1Z2 117 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 AIPO00170 330 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 HLA-DQB1P01920 261 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 MNDAP41218 407 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 P2RX1P51575 399 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 CBFBQ13951 182 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 PWWP2BQ6NUJ5 590 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 SYS1Q8N2H4 156 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 GPR148Q8TDV2 347 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 TNFAIP8L1Q8WVP5 186 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 SLC25A44Q96H78 314 aaPredicted RBP12.07□□□□□ -0.48
VPS54-203ENST00000409558 OR1F2PQ96R84 312 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 CA10Q9NS85 328 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 HAO2Q9NYQ3 351 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 DHDHQ9UQ10 334 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 CAMK2AQ9UQM7 478 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 GPR171O14626 319 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 ARPC3O15145 178 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 KLK2P20151 261 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 INSM1Q01101 510 aaPredicted RBP12.07□□□□□ -0.48
VPS54-203ENST00000409558 TLE3Q04726 772 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 ELAVL1Q15717 326 aaKnown RBP12.07□□□□□ -0.48
VPS54-203ENST00000409558 WDFY1Q8IWB7 410 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 BOLLQ8N9W6 283 aaKnown RBP12.07□□□□□ -0.48
VPS54-203ENST00000409558 EMC7Q9NPA0 242 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 PCDHGA9Q9Y5G4 932 aaKnown RBP12.07□□□□□ -0.48
VPS54-203ENST00000409558 PDCD5O14737 125 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 SC5DO75845 299 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 ASAH2BP0C7U1 165 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 GSG1Q2KHT4 349 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 BEX5Q5H9J7 111 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 OR5D18Q8NGL1 313 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 PTDSS2Q9BVG9 487 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 METTL7AQ9H8H3 244 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 HRH3Q9Y5N1 445 aa12.07□□□□□ -0.48
VPS54-203ENST00000409558 A0A1B0GVI7 797 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 A0A1W2PR77 199 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ITGA5P08648 1049 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ZNF28P17035 718 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 ALOX5APP20292 161 aa12.06□□□□□ -0.48
VPS54-203ENST00000409558 PSMA6P60900 246 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms