RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SCO1O75880 301 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 GLCEO94923 617 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 MMP7P09237 267 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TNFSF4P23510 183 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 GDF1P27539 372 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TEAD1P28347 426 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 HTR5AP47898 357 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NPBWR1P48145 328 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SYT14P1Q58G82 188 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 AADACL3Q5VUY0 350 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 WDR88Q6ZMY6 472 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 BCDIN3DQ7Z5W3 292 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 VRK3Q8IV63 474 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 FAM26EQ8N5C1 309 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OR2D3Q8NGH3 330 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OLIG1Q8TAK6 271 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 DYRK2Q92630 601 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 UBE2FQ969M7 185 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TOE1Q96GM8 510 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC6A18Q96N87 628 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NUDT22Q9BRQ3 303 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SMLR1H3BR10 107 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC35E2P0CK97 266 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF728P0DKX0 622 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC6A11P48066 632 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 KIAA1024LP59773 190 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 MFAP5Q13361 173 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ERV3-1Q14264 604 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 IQCJQ1A5X6 159 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TMEM64Q6YI46 380 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC16A14Q7RTX9 510 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OVCH1Q7RTY7 1134 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 BPHLQ86WA6 291 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 KCNRGQ8N5I3 272 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 C19orf47Q8N9M1 422 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 HLA-CQ95604 372 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SMIM12Q96EX1 92 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NUDT16L1Q9BRJ7 211 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SEC22CQ9BRL7 303 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 PPP1R14DQ9NXH3 145 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 C17orf112F2Z3M2 114 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 GABARAPH6UMI1 98 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 HCRTR1O43613 425 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 IGFBP1P08833 259 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 GIPP09681 153 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OR13C7P0DN81 318 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SRMP19623 302 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 DPP4P27487 766 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 CST5P28325 142 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 CHRNB4P30926 498 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 CLPPQ16740 277 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OR5M10Q6IEU7 315 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ABHD17CQ6PCB6 329 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TMEM207Q6UWW9 146 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NPSR1Q6W5P4 371 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 FJX1Q86VR8 437 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OR4D10Q8NGI6 311 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 MBOAT4Q96T53 435 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 P2RY12Q9H244 342 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NSA2O95478 260 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 OPN1LWP04000 364 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF25P17030 456 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ARNTP27540 789 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 RAB1AP62820 205 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 MEP1BQ16820 701 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 Q1RN00 199 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 IAH1Q2TAA2 248 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 S100A7AQ86SG5 101 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 FAM174AQ8TBP5 190 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 BLNKQ8WV28 456 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ARRDC3Q96B67 414 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 ANKRD9Q96BM1 317 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 MAP6Q96JE9 813 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SEMA4CQ9C0C4 833 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 MYOTQ9UBF9 498 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TMED7-TICAM2A0A0A6YYA0 188 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NPPBP16860 134 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 BCKDHBP21953 392 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 RPL24P83731 157 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC10A1Q14973 349 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TMEM176BQ3YBM2 270 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC46A1Q96NT5 459 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 NKX3-1Q99801 234 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 GABARAPL3Q9BY60 117 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 CHST8Q9H2A9 424 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 TMED7Q9Y3B3 224 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 EMC9Q9Y3B6 208 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 BET1O15155 118 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CHRM2P08172 466 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 STAG3L2P0CL84 134 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 NQO2P16083 231 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SULT1A2P50226 295 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 RACK1P63244 317 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CSNK1G2P78368 415 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ACVR1Q04771 509 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ZP2Q05996 745 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 IHHQ14623 411 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SMAD2Q15796 467 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 MOGAT2Q3SYC2 334 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms